Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000505 |
| length | 1943 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 5 |
| gene id | XLOC_000310 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 25783801 ~ 25799051 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0090594 | inflammatory response to wounding | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0001505 | regulation of neurotransmitter levels | biological_process |
| GO:0098916 | anterograde trans-synaptic signaling | biological_process |
| GO:0006182 | cGMP biosynthetic process | biological_process |
| GO:0099536 | synaptic signaling | biological_process |
| GO:0099537 | trans-synaptic signaling | biological_process |
| GO:0009449 | gamma-aminobutyric acid biosynthetic process | biological_process |
| GO:0009190 | cyclic nucleotide biosynthetic process | biological_process |
| GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0019842 | vitamin binding | molecular_function |
| GO:0016829 | lyase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016849 | phosphorus-oxygen lyase activity | molecular_function |
| GO:0004351 | glutamate decarboxylase activity | molecular_function |
| GO:0004383 | guanylate cyclase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050417-230 | Predicted to enable guanylate cyclase activity and nucleotide binding activity. Acts upstream of or within inflammatory response to wounding. Is expressed in diencephalon and floor plate. Human ortholog(s) of this gene implicated in Moyamoya disease. Orthologous to human GUCY1A1 (guanylate cyclase 1 soluble subunit alpha 1). |
| ensembl_id | ENSDART00000143822 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003074 | lncRNA | upstream | 62099 | 25719653 ~ 25721702 (+) | False | XLOC_000308 |
| TCONS_00000503 | lncRNA | upstream | 62099 | 25719653 ~ 25721702 (+) | True | XLOC_000308 |
| TCONS_00002836 | lncRNA | upstream | 230502 | 25550612 ~ 25553299 (+) | False | XLOC_000305 |
| TCONS_00002838 | lncRNA | upstream | 230502 | 25551151 ~ 25553299 (+) | False | XLOC_000305 |
| TCONS_00002837 | lncRNA | upstream | 230502 | 25551151 ~ 25553299 (+) | True | XLOC_000305 |
| TCONS_00000508 | lncRNA | downstream | 11929 | 25804642 ~ 25812959 (+) | True | XLOC_000311 |
| TCONS_00000510 | lncRNA | downstream | 55902 | 25848615 ~ 25849235 (+) | True | XLOC_000312 |
| TCONS_00000514 | lncRNA | downstream | 306580 | 26099293 ~ 26101025 (+) | True | XLOC_000315 |
| TCONS_00000525 | lncRNA | downstream | 674358 | 26467071 ~ 26473854 (+) | False | XLOC_000321 |
| TCONS_00000530 | lncRNA | downstream | 674540 | 26467253 ~ 26474380 (+) | False | XLOC_000321 |
| TCONS_00000504 | mRNA | upstream | 49934 | 25732715 ~ 25733867 (+) | True | XLOC_000309 |
| TCONS_00000502 | mRNA | upstream | 85762 | 25696798 ~ 25698039 (+) | True | XLOC_000307 |
| TCONS_00000501 | mRNA | upstream | 117197 | 25650917 ~ 25666604 (+) | True | XLOC_000306 |
| TCONS_00000498 | mRNA | upstream | 467652 | 25218177 ~ 25316149 (+) | False | XLOC_000303 |
| TCONS_00000497 | mRNA | upstream | 567566 | 25178112 ~ 25216235 (+) | True | XLOC_000302 |
| TCONS_00000507 | mRNA | downstream | 8935 | 25801648 ~ 25841659 (+) | False | XLOC_000311 |
| TCONS_00000509 | mRNA | downstream | 55518 | 25848231 ~ 25851575 (+) | False | XLOC_000312 |
| TCONS_00000511 | mRNA | downstream | 219955 | 26012668 ~ 26045715 (+) | True | XLOC_000313 |
| TCONS_00000512 | mRNA | downstream | 279156 | 26071869 ~ 26096572 (+) | True | XLOC_000314 |
| TCONS_00000513 | mRNA | downstream | 306537 | 26099250 ~ 26103232 (+) | False | XLOC_000315 |
| TCONS_00000495 | other | upstream | 663596 | 25120089 ~ 25120205 (+) | True | XLOC_000301 |
| TCONS_00000490 | other | upstream | 1399104 | 24382967 ~ 24384697 (+) | True | XLOC_000295 |
| TCONS_00000480 | other | upstream | 1669243 | 24114525 ~ 24114558 (+) | True | XLOC_000287 |
| TCONS_00000478 | other | upstream | 1916836 | 23866878 ~ 23866965 (+) | True | XLOC_000285 |
| TCONS_00000472 | other | upstream | 2032588 | 23751099 ~ 23751213 (+) | True | XLOC_000283 |
| TCONS_00000518 | other | downstream | 318672 | 26111385 ~ 26119624 (+) | True | XLOC_000317 |
| TCONS_00000557 | other | downstream | 1920636 | 27713349 ~ 27730980 (+) | False | XLOC_000329 |
| TCONS_00000565 | other | downstream | 2184657 | 27977370 ~ 28001937 (+) | False | XLOC_000332 |
| TCONS_00000567 | other | downstream | 2191680 | 27984393 ~ 27995611 (+) | True | XLOC_000332 |
| TCONS_00000579 | other | downstream | 3275949 | 29068662 ~ 29080336 (+) | False | XLOC_000337 |
