RNA id: TCONS_00000513


Basic Information

Item Value
RNA id TCONS_00000513
length 551
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_000315
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26099250 ~ 26103232 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGCTTTGCACTCTGGGAAGTTTGTCCTCTTCAGCTGTCATTGTAGATTCTGCTTGGTTggaaaaaatagacaaaaacagTATGTCCGGATACACACCGGATCAAAAACTGCGCTTTGAGCAGTTAGTAAAGCTCCGCCGGCAGTGGCTGAAAGACCAGGAGCTCAGTCCTCGAGAGCCCGTCGTTGCACCTTCAACACCCGGCCGCATAGAGCGATTCTGGACCCGATTCCTGGAGCCCAAAACACTATGGAGACTTTACACATATAAAGCCTATTTCGCCGGTGTTACAACCCTCAAGGTGGTTCTGCTCCCAGCCTGGGTCCTGCATTACTATCTGAAATACCACGTCTCTGAAACACCATTTGCAATAAGCGCTCAAAAACCCAAACTGTTTCCTGGAGACgtcattttggaaacaggagaggTTGTCCCAGATTTTCCCGAAGACAGTCATGGTCATCATTAATGATACCTGATTAAATTCAGTTTCAATATGcctgtgtgcatgtttttgtgtaTACTATGTCAATAAAGTTTATTATACTTTA

Function

GO:

id name namespace
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040426-1781 Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to act upstream of or within mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including adaxial cell; alar plate midbrain region; optic tectum; optic vesicle; and retina. Orthologous to human NDUFB6 (NADH:ubiquinone oxidoreductase subunit B6).

Ensembl:

ensembl_id ENSDART00000054205

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000510 lncRNA upstream 250015 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000508 lncRNA upstream 286291 25804642 ~ 25812959 (+) True XLOC_000311
TCONS_00000505 lncRNA upstream 306537 25783801 ~ 25792713 (+) False XLOC_000310
TCONS_00003074 lncRNA upstream 377548 25719653 ~ 25721702 (+) False XLOC_000308
TCONS_00000525 lncRNA downstream 363839 26467071 ~ 26473854 (+) False XLOC_000321
TCONS_00000530 lncRNA downstream 364021 26467253 ~ 26474380 (+) False XLOC_000321
TCONS_00000532 lncRNA downstream 392409 26495641 ~ 26496930 (+) True XLOC_000321
TCONS_00000533 lncRNA downstream 447802 26551034 ~ 26554839 (+) False XLOC_000322
TCONS_00003075 lncRNA downstream 448442 26551674 ~ 26553638 (+) False XLOC_000322
TCONS_00000512 mRNA upstream 2678 26071869 ~ 26096572 (+) True XLOC_000314
TCONS_00000511 mRNA upstream 53535 26012668 ~ 26045715 (+) True XLOC_000313
TCONS_00000509 mRNA upstream 247675 25848231 ~ 25851575 (+) False XLOC_000312
TCONS_00000507 mRNA upstream 257591 25801648 ~ 25841659 (+) False XLOC_000311
TCONS_00000506 mRNA upstream 300199 25783801 ~ 25799051 (+) True XLOC_000310
TCONS_00000515 mRNA downstream 1909 26105141 ~ 26109961 (+) False XLOC_000316
TCONS_00000516 mRNA downstream 1928 26105160 ~ 26107107 (+) True XLOC_000316
TCONS_00000517 mRNA downstream 7753 26110985 ~ 26127944 (+) False XLOC_000317
TCONS_00000519 mRNA downstream 252973 26356205 ~ 26398581 (+) False XLOC_000318
TCONS_00000520 mRNA downstream 252973 26356205 ~ 26402046 (+) False XLOC_000318
TCONS_00000495 other upstream 979045 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 1714553 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 1984692 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2232285 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 2348037 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000518 other downstream 8153 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 1610117 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1874138 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1881161 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2965430 29068662 ~ 29080336 (+) False XLOC_000337

Expression Profile

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