RNA id: TCONS_00000520


Basic Information

Item Value
RNA id TCONS_00000520
length 5887
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_000318
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26356205 ~ 26402046 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTGAGTAAGTTTTTGATTTCCATTGGTCACCGAAGACATGGACTGTGCAATCCAGTTCGGTGCTTCAGGGCAGCCAGTAAAGTGTGCACTATTGTGTgcggctggaaaaaaaaaaaagagagagagagagagcaaaaaagGAGGGGGAAGCAAAGAAACCCAGTTTCTTTGTGTGGAGAGGACCCAGCAGGAAAGTGGTTTTGCAATTACTTCAGCTTGCCGGCAAAGCAGGCTGAGTTCCTCTGTTATGTACACACTTGCACACTGGACTGTCTCACTCTGTTCTGCCTTTACAAGCACATACAAGAGTAAGCGTGTGTTTACGGGCTGCGTCTGGACGCGCTTTGAAAGCCAACAGCAACGCAGGGCTTCTGCTGCTGATGATGAAAGCAGACGTCAGACCAGCCCATGAATATTGATATGGAGGTAGTCTGTTTCATAGACTGAACAGAAGGAAGCAAGATGGCTGCCCTTTAGGATTTGTTTAAGAGGAGACCTAGACGGTTTGTTGGAATTCTACAAAGTGGAGGGACTTGAAACAAGGGCAGCCTTGTGAATGGACCCAGAGCAGACCAGATGGAAACAGAAAAGACCAGCAATGAGACGGAAAAAAGTCATATACTTGCAAAAATCAGTGCCACTCAGCAGACAGACTTTCTCACCAAGCACCAAAATGGAGATCAGTCACCCGAAGTCTTGTCTCAGCAGAAGGTCCCTGCTAACTTGCAGGGGATATTTGATCAAAGTATGTTTGGAATGAAAGGACAGATGAAACACGCTCTTAGTGAACAGGCACTTTTGGACTTTCACCAGACCAAAACATTGGTGAATGGAAACGAGAACCCAAGGATTTGGGATAAAAGTGAGGCAGGAATGGAAAACCGATTAGAGGTATTTCCCAAACATAACAAGGCAGGGGATTTAACACATGCTaaaataaactgtaactttacaaATGGTGATTTATTCTCACTGTCACGGAACAAGCAAGTTCAAATGCCCAATGGTGCTACAACAAGTCCTCCTTCAGTAAAGGGTACAACTGGTGACCTCTTAGAGAAAACATTGTCTCAGTATTACCCAGAGCATGTGTCCATTGCACCTCAAACCAACTCATCTCAAGTAGATCAGGTCACCAGCAACCTGCCTGATCAGGCAACTTCTTCACCTTCATTTACCTCAGGTTTTCCTATTTCACCCCAAATATCTGCCTCAGAGACACTTGTCAAGGCACCTCCCGAAGTACAAAACAGCAATGGCTATAACCCTGAACTTGCAGTAAATGGATACTCCAGTTTTGCAGCTGAGCAAAAGAAGCCTGCTTATTCTCTGTCTGATCTCCCAGAGCTAAGTCAGAAAGATTCAGAGTCTAATGTGCCATCACAGACAGTCGTCAATGGTTCCTCACAAATTCAAGAAGATAGAGAAGCCCTTCCAAATGACTCTGAGTGTGTAAACATGTTCTCCAAATCCAATCAGAATTTAAGTCATGGATCTTATACATTGCCCCCGGTGACAGCAGGTTCCCCCTCACAAACCTCTCAGACAGGTCAGTATAACCCACAGATTAAAGTgccacagaaaaaaacaactgatGAAAACCTCCATGGCAATAGAGACTTTTCCTTGCTTCAGCAACAGACTCATGAGCCACAAGCAGTAGAGAGCAAGTTGATTCCCCAGGCATGTACTTCCCCTTCTCAAAATCGAAACAATGATCAAGACAACAAGTCTAAATTAGGACTAGAAAAAACACTGTCAAAGGGTACAGATCCATCATCCCAGATGGAATGGATAGATTTAAACTCAACTTCTGCTTCAACACCATCTACTGAACACTCCCAGATGTGGGATTTGTTCCTTCCACAGACCAACATACAGCAACATACAGTCCCACAGAGTCAAAGTCAATGTATAAATTCCATTCCCCCAAACAACTTTCAGTCTCACAATTTCAGTAATTCCAGTTTTCCCTCACATGAAATTGAGGCACAAGAGAACAAAAACATGCTACCTCCTACACGGTTTCCCCATAGTGCTGCCCCTGAAAGTCAACAGAGAAATTCTGGTATGCACAATCATATTAACATGCAATTTAACAACCCGCAACATATGTCCCAGAAATTATGCAAAAATGATCAAGACCAGATACTATCCCCAAGCTTCCTTTCCCAGCTACCACCTACTGAAACTCATCAGCAAGCCACCAGCACATTTTCCAATCAGCTCCCTCAGGATAGGCAGAATATGCAAGCATCTCCACTATCACGAGATGCTTCCCGTAGTCAAGAAGTTGAGCCACTCCTAAAAAAGCTTAAAACAGAGGACTACCTTCATTCAGAATTCCAGATGTTACCTGCATGTATCAAAACACCAGCACAAGTTCAAATTTCAAGTAAGGCTATAAGAGAAAACTTTGGATTTCAAGACTCATCCAAGTCAAACACACCATCCTTGTTTAAAGAAGTAGAAGCTCTAACAGAAAGGAAACTCCAGCAGAACACAGAGTGCTCACAGAACATTAGTACAGGACAACAAATCTACCAGCAACCTCTCCAACATAGGATATACAATCATTCAGAATTCTCACAGTCACTGATTTCTCAATCACAACATTCACAAGCTTCTGATGGTCTTCAGATACCTGTTCGGACATTGACCAAAGCTGAATTCCATGAGTCCTTTGCCCAAATCCAGAGAGAGTCTCTCTCAAGCAATGGTGCTCAAATGGATGTTCAGAGGCATGCAGCTTTGCGAATGCACCTTCTGCAGAGGCAGGAACGGCAAAGCCCCAACAACATTAGACAAATGATGCCAGCCATAAAAAGTGAAAACTGCTCAGGTTTTGAAATCTCAGCTCAACCTATGGAAGTGCAAAGGCAACATGAAGACCACACCAAAGTCTTAAAGGCCGTGGTAAAACAAGAGCATCCTCCTTCTTCATGTGATGAAAACCAGCAGAGAAGTATTCTAGCTACCATGGAGCAGCAGCTTAAACAATACCAACTCTCACCTGTGTTTGAAAAAAAGTCTTTGGTAATCAAGTCTCCCAATAAGGTGAAAGTGGAGATGGCTGGAGCTGTGACTGTGATCTCAACCAATGCTGAAGGGAATGCAAAGGAACAGTGCAAACAACAACATTTTACACCACCTAAAAAGATTGAACCTGGCTTACAAAGCTTTCTGGAGTCACCCATGAAGTTGCTTAATACACCAATAAAAAATTTGATGGATACACCTCTGAAGACACAGTATGAAATACCTTCATGCCATTGTGTTGAGCAAATTAGTGAAAGGGACGAAGGCCCATATTATACTCATTTAGGATCAGCTTCAAATGTTGCAGGCATCCGCAAAATTATGGAAGAAAGATCTGGAATGACTGGAAGTGCCATTAGAATTGAAAAAGTTTTGTACACAGGCAAGGAGGGCAAAAGTGGGCTGGGTTGCCCGATTGCTAAATGGGTAATACGGAGAGCAAATGAAGACGAGAAAATCCTGGTCTTGGTACGAGAGAGGGCTGGTCACTCGTGCGAGACATCCTGTGTAGTAGTTGTCATCCTAATTTGGGAAGGGATACCAACCAGCCTGGCTGATCGTCTCTACATGGAACTAAGTGATACTTTAACAAAACATGGAGCCCTGACCAACCGCAGATGTGCTCTTAATGAAGAGAGAACATGTGCGTGTCAGGGTTTGGAAGCTGATGCTTGCGGAGCTTCTTTCTCTTTTGGTTGCTCTTGGAGCATGTACTATAATGGCTGCAAATTTGCAAGGAGTAAAGTTCCTCGCAAGTTCAAATTGCTTGCTGATGATCCCAAGGAGGAAGAGAAAATTGAACAAAATCTCCAAGGTCTTGCAACCTACATTGCCCCAGTGTATAAGAAAATGGCACCTGATGCTTATAGTAATCAGGTAGAGCACGAAAACAGAGCTCCCGACTGCCGGCTGGGCCTAAAAGAAGGACGGCCATTTTCAGGAGTGACCGCCTGTCTAGACTTCTGTGCTCATGCTCACAGAGACCTCCACAACATGCAAGGGGGCAGTACTGTGGTCTGCACGCTAACAAGAGAGGATAATCGCGAGATTGGAAAAATTCCTGAGGATGAGCAGCTGCATGTGCTTCCCTTATACAAGCCCTCATCCACTGATGAGTTTGGCAGTGCTGAGGCTCAGCTGGAAAAGACCAAGACTGGTGCCATTCAGGTGCTTAGTTCCTTTCGAAGGCAGGTGCGTATGCTACCAGAGCCTGCAAAGTCTTGCCGTCAAAGGAAACTGGATGCCAAGAGAGCTAACAAACCAAACAACAACACACCCAACTCTAAAACGGACAACACCCAGCAAGCAAAGCAGAAACAGACTGCTTATGAGAACCCAACAGTGACAGGACGAGGTAACATGAGAACAAATCTTGACTCTGGGCATCTTCCACAAGCTCATGCTGGCCATCAGCCTCAGCAGCAGTTCCCGCAACAAACTCATCCCAATCCTTCTTACGCTTCCCCACCATTCACTCGATTCCCAAATGCTTCTAAACCATCAACCCCACATCCTCAAACACCTTCTGTGGATCCCTATGCCTCTCCTTTACATGCACCAAACTCTTACATCAATGCTTCTAATGCTCCCTCACCCTATTCAAGATCTCTTGCACCCAGCCCTCTCTACAATGGCTACCAATGTAATGGGGGGATTCCCATGGACAACTATCATCCTTACCACTCCTCCAATCTAAAGCATCCAGATATGTTTCATCCCCAAAGAAATCCACTTTATTCTGAGCAGCAGTACAATGCACCTCAACACTATGGAGTCAACTATCCACCACATTATGGAGAGGCTATGGCAACTAATGGTTATGGCAACTGTAACATGAGACCTGGAATACACTCTATGGGACACTATCCAGGCTTTGATTCTAATATGTCAACGAATGCATTCGCCAGGCCCCCTTCAGCCCATCTACATTTGGACTATGCAGCTGCTGGCAATGCATACCCCAAACCTCACATTTCCCAGAATCCTCATATGTTTTCCCCAAATCTGAATACCTTAAGTATGCAAAGTCATAAAGATTTAGGGATAAGCATGCATGAAGCAAACGGTATCTCTCAGGGGTTTCCTCCATTGGGAAAGGAATGCTTCAACTTTAACCAACCATCAAGCTTGAAGCTTCCCAATGAAAATGCCCATAACCCGGCTGTCAACCCAACACAGCTACCCCAGGTTTCAGAAAAAAAGGAGGAAGATGTGTGGTCTGATAGTGAGCACAACTTCCTTGATCCTGAAATTGGAGGAGTGGCAGTGGCACCTAGTCATGGGTCTATTATTATTGAGTGTGCTAAGCGGGAGCTTCATGCTACCACGCCAGTCAAGAAGCCTGATCGCAACCATCCCACCCGTATCTCTCTGGTGTTTTATCAGCACAAGAACTTAAATGAGGCAAAACACGGACTGTCTCTGTGGGAAGCAAAGATGGCAGAGAAGGCTCGGGAAAAAGAAGAAGATGCTGAGAAGCATGGAGCTGAAAACACTTCCAGCAAGAGCGGAGGAAAGAAGGCGAAACGAGAACATTCAGAACATTCTGAACCTTCTGAGCCTCCATATAAGCAGTTCCTTCTCATGCTTACCGAACGGTCAATGTCCTGCACTACCAATACATACCAATAGCACAAACAGCTCTGTGCTGGCTGCCCCAGAAGATTCAAGATGGAACTTCAATCCGCCTACTGAAAGAGTTGCCCATCTTATTTACAGGTTTGCCTGTTAATGCATCAGGTCTTAAATTCTCCTTTGtcttttataattttacataaGAACATCAAATACTTTCTTAGTTCTCACTTCATCACTTTCTATACTTTGGGCAAAGCATAATTTACAG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0080111 DNA demethylation biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0098508 endothelial to hematopoietic transition biological_process
GO:0070989 oxidative demethylation biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-98 Enables methylcytosine dioxygenase activity. Involved in regulation of gene expression. Acts upstream of or within several processes, including cell surface receptor signaling pathway; endothelial to hematopoietic transition; and primitive erythrocyte differentiation. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; eye; hematopoietic system; liver; and pleuroperitoneal region. Used to study myelodysplastic syndrome. Human ortholog(s) of this gene implicated in acute myeloid leukemia; chronic myelomonocytic leukemia; myelodysplastic syndrome; myeloproliferative neoplasm; and primary immunodeficiency disease. Orthologous to human TET2 (tet methylcytosine dioxygenase 2).

Ensembl:

ensembl_id ENSDART00000176380

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000514 lncRNA upstream 255180 26099293 ~ 26101025 (+) True XLOC_000315
TCONS_00000510 lncRNA upstream 506970 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000508 lncRNA upstream 543246 25804642 ~ 25812959 (+) True XLOC_000311
TCONS_00000505 lncRNA upstream 563492 25783801 ~ 25792713 (+) False XLOC_000310
TCONS_00000503 lncRNA upstream 634503 25719653 ~ 25721702 (+) True XLOC_000308
TCONS_00000525 lncRNA downstream 65025 26467071 ~ 26473854 (+) False XLOC_000321
TCONS_00000530 lncRNA downstream 65207 26467253 ~ 26474380 (+) False XLOC_000321
TCONS_00000532 lncRNA downstream 93595 26495641 ~ 26496930 (+) True XLOC_000321
TCONS_00000533 lncRNA downstream 148988 26551034 ~ 26554839 (+) False XLOC_000322
TCONS_00003075 lncRNA downstream 149628 26551674 ~ 26553638 (+) False XLOC_000322
TCONS_00000517 mRNA upstream 228261 26110985 ~ 26127944 (+) False XLOC_000317
TCONS_00000515 mRNA upstream 246244 26105141 ~ 26109961 (+) False XLOC_000316
TCONS_00000516 mRNA upstream 249098 26105160 ~ 26107107 (+) True XLOC_000316
TCONS_00000513 mRNA upstream 252973 26099250 ~ 26103232 (+) False XLOC_000315
TCONS_00000512 mRNA upstream 259633 26071869 ~ 26096572 (+) True XLOC_000314
TCONS_00000522 mRNA downstream 9450 26411496 ~ 26437820 (+) True XLOC_000319
TCONS_00000523 mRNA downstream 42940 26444986 ~ 26465429 (+) False XLOC_000320
TCONS_00000524 mRNA downstream 43569 26445615 ~ 26466002 (+) True XLOC_000320
TCONS_00000526 mRNA downstream 65025 26467071 ~ 26508144 (+) False XLOC_000321
TCONS_00000527 mRNA downstream 65036 26467082 ~ 26480706 (+) False XLOC_000321
TCONS_00000518 other upstream 236581 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1236000 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 1971508 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2241647 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2489240 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 1311303 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1575324 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1582347 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2666616 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 3429713 29831759 ~ 29860373 (+) False XLOC_000356

Expression Profile

//