RNA id: TCONS_00000522


Basic Information

Item Value
RNA id TCONS_00000522
length 2764
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_000319
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26411496 ~ 26437820 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAGTGGGAGCAGAGAGGGTCAACATGGATCCCAGCCAGGCCAGCGGGCATGACAGGGAGAAtgaaaaaggggagaaaaaggaaaAGGACAAAACCATTAAAAGGAGAAATAGACTTTTCATAAGATACCTGGAAAGGAGGAAGACAGACACTATTGTGGATGATGACTCCTCCAAAGGTGACATCAGCATCGCAACATTGGTGAGAAGGAGCCAATCTGACAAGACAGAGTACAGTTCAAAACTTAAAGAGAAAATGTCCCCCCATGGTCTCTCCTTACTTGCATCTCCAGCCATGGATCCAGAAGAGATCCGTCACAGGAAGATGATAAAAAGGTCAAAGGTCATTGAGGAGCTGGTCAGGACGGAGGGAGATTATCAACGGGACTTAGAGCTTTGCATAAATGAAGTTCTGCTTCCTCTGAGAGAAGCACAGGTTGTGGATGTGGATCGACTTTTCACCAACATTGAGTCTGTGTGTGATGTCTCTAACGATCTGCTCCTGAGGCTCCAAGATGCCATAGCTGACCCTGACCCTGAAACACAGCTTATAGGAGAAGTGTTTATCCAAACCAAAGCTGTCATAGAGGAGGTATATAAAATTTACTGCTATCATCACGATGAAGCTAATGCCTCACTTAAGTCTTATGAAGCCCAGGAAGACATTCAGCAGCAGTTCAGAAGATGCATATCAGCACTCAAGAAAATATATGACCTTGAAGGGAAGCCTAATTTGCTTGACATGGGTTCTCTACTCATTAAACCAGTCCAGCGCATCATGAAATACCCACTTCTATTGGCTGAACTGTGGAATGCGACACCCACAGATCACCCTGACCACAGGCCTTTACAGGAAGCTCTTACAACAGTGAAGATCATAAACATCAACATTAATGAGTTTAAGAGGAGGAAAGACATAGTGCTGAAGTATAAGAGGAGTGATGACGAAACCTCACTGATGGGTAAACTTAACAAGTTCAACATTCATTCCATCAGGAAAAAATCTGACCGCCTGACCAGCTATTTTAAAATTCTCACTGGTGTCGAGCCACAGGTGAGAGATGAAGCTTTTGACAAGGAGGAAAAACTTTTCCGTAACCTTGAGAAAGCCGTGAGGCAGTTAGTGAAAAACATCAGCTGTTACTTGCTCTATACACAGGAGATGATATCAGTTGCTGTTCAAAATGCACAGGATCTTGAATCTATAATGAAGGATCCGGATAAAATAGACACAAATGGCTTTCATCAAAAGAAGAATGGCAACGACCCATACAAACACTTTAAAGATCACATGGAGCATTTGGTTGTGGCTCCTCTGTCTAGCCTGCTGGGAATGTTTGCGTCGCCGCAGAAGCTGATACAGAAGCGTTATGATAAACTGTTGGACTACTGCAGTCAGCTGGATTCCCGATCTTCAAACGAGGAACAGGGCCTTGCTAAAAGAGATTACGAGGCCCTCAATGCTCAGCTGCTAGAGGAGCTGCAATGCTTCAACCAAGCCGCCAGGACCATACTCACCAACTGCTTGATTTGTATAGTGAAATTAATACGAAAGCTGATGGACGCAGCTCAACCGCCTGTCCAACAGCTACCGGTTCCCTTGTCAAACTTCAATGAAGTCCAAAATTCTATCATGGAAGAGCTGAGCAACCTTGGATTCTTCAAAGAAAATTCCCAAAAGCTGATGGAGCGCAAAGTGAGCTTTGAGAAACGGGAAAAGAAAATGGCTCCAGAGATCCTCAGACAGACAGAGGAACAGAGGGCTCGGCTCCTGGAAGAGTATCCTGTGAAACAGCTCTACCAACTCAAGCGCAACTGCAATGCCTGTCAGGAAAAAGACATCAGCCTGCTGGAGGGAGAGCTGGTGGCTCTGCTGGAGGACAGAGACCCGATGGGCAGCAGCAGCCGCTGGCTAGTGCACACTGGGAgtgtgCAGGGATATGTGTATTCCTCATTCCTGAAGGCTTATAACCCCCAGCGGGAGGTGACGGAGAGGCCGGATGACTTTGACAATCTGAGTCTGTTTGTGTCGGCCAGCAGAAGCAGCAGCATGAGGAGCTTTAGCACTTCAGACAGTGTGTCTCCCCAGTCTGCACCACAGGATGAGCTGGACACCTCAGATGACCAACATTTCTATGCCGTTTATGCATTCAAGGCTCGCTGTGAACAAGAGCTCACACTTCAGGAGTACCAACACGTTCGTATCCTTCAGTTTTCAGATCTCGGCGGAAACAAAGACTGGTGGCTTGCTGAATCTAATGGACAGAAAGGCTACGTTCCAGCAAACTACCTTGGAAAGATGTCATACGCCTAAAGCTATTTTTTACATGCAATATTTAAAagtgaagttttattttttttttaaatatgaaggtAACTGCTTAATGAAGGCCAATCATGCACAACCCTTTTGCACTACAAATGATGCTACCAACAGTGTTTGCTTAAATTCTATACAAATTATCAacttaatcagaaaaaaaaaatatatatatatattttgtgtaaatacaatgataataatatatgaaaaaagctctattgtgaataaaatatttataaccatttaaaaaatgtcCTTGTTTGTTTGTGAGGGGAGGTACAGGTACAAGTACAGGTAtatcaaatatctcatttttaTATAATGATGAGATAGTGGATGTGTTCTGCTAAACATGGTCAAATCTGAAATACTTCtattttgcaaataaataattaaacattaaaagaaccAAAGCAATAAAAAAAGGTCACCCAAAAATT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090313-83 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in Golgi stack and cell junction. Orthologous to human ARHGEF38 (Rho guanine nucleotide exchange factor 38).

Ensembl:

ensembl_id ENSDART00000112263

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000514 lncRNA upstream 310471 26099293 ~ 26101025 (+) True XLOC_000315
TCONS_00000510 lncRNA upstream 562261 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000508 lncRNA upstream 598537 25804642 ~ 25812959 (+) True XLOC_000311
TCONS_00000505 lncRNA upstream 618783 25783801 ~ 25792713 (+) False XLOC_000310
TCONS_00000503 lncRNA upstream 689794 25719653 ~ 25721702 (+) True XLOC_000308
TCONS_00000525 lncRNA downstream 29251 26467071 ~ 26473854 (+) False XLOC_000321
TCONS_00000530 lncRNA downstream 29433 26467253 ~ 26474380 (+) False XLOC_000321
TCONS_00000532 lncRNA downstream 57821 26495641 ~ 26496930 (+) True XLOC_000321
TCONS_00000533 lncRNA downstream 113214 26551034 ~ 26554839 (+) False XLOC_000322
TCONS_00003075 lncRNA downstream 113854 26551674 ~ 26553638 (+) False XLOC_000322
TCONS_00000520 mRNA upstream 9450 26356205 ~ 26402046 (+) False XLOC_000318
TCONS_00000519 mRNA upstream 12915 26356205 ~ 26398581 (+) False XLOC_000318
TCONS_00000521 mRNA upstream 24188 26356360 ~ 26387308 (+) True XLOC_000318
TCONS_00000517 mRNA upstream 283552 26110985 ~ 26127944 (+) False XLOC_000317
TCONS_00000515 mRNA upstream 301535 26105141 ~ 26109961 (+) False XLOC_000316
TCONS_00000523 mRNA downstream 7166 26444986 ~ 26465429 (+) False XLOC_000320
TCONS_00000524 mRNA downstream 7795 26445615 ~ 26466002 (+) True XLOC_000320
TCONS_00000526 mRNA downstream 29251 26467071 ~ 26508144 (+) False XLOC_000321
TCONS_00000527 mRNA downstream 29262 26467082 ~ 26480706 (+) False XLOC_000321
TCONS_00000529 mRNA downstream 29412 26467232 ~ 26509316 (+) False XLOC_000321
TCONS_00000518 other upstream 291872 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1291291 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 2026799 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2296938 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2544531 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 1275529 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1539550 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1546573 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2630842 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 3393939 29831759 ~ 29860373 (+) False XLOC_000356

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_10938720_10949086.mRNA True 3431 mRNA 0.41 14 CI01000300 10937714 ~ 10949231 (+)