XLOC_000319 (arhgef38)


Basic Information

Item Value
gene id XLOC_000319
gene name arhgef38
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26411496 ~ 26437820 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000522
AACAAGTGGGAGCAGAGAGGGTCAACATGGATCCCAGCCAGGCCAGCGGGCATGACAGGGAGAAtgaaaaaggggagaaaaaggaaaAGGACAAAACCATTAAAAGGAGAAATAGACTTTTCATAAGATACCTGGAAAGGAGGAAGACAGACACTATTGTGGATGATGACTCCTCCAAAGGTGACATCAGCATCGCAACATTGGTGAGAAGGAGCCAATCTGACAAGACAGAGTACAGTTCAAAACTTAAAGAGAAAATGTCCCCCCATGGTCTCTCCTTACTTGCATCTCCAGCCATGGATCCAGAAGAGATCCGTCACAGGAAGATGATAAAAAGGTCAAAGGTCATTGAGGAGCTGGTCAGGACGGAGGGAGATTATCAACGGGACTTAGAGCTTTGCATAAATGAAGTTCTGCTTCCTCTGAGAGAAGCACAGGTTGTGGATGTGGATCGACTTTTCACCAACATTGAGTCTGTGTGTGATGTCTCTAACGATCTGCTCCTGAGGCTCCAAGATGCCATAGCTGACCCTGACCCTGAAACACAGCTTATAGGAGAAGTGTTTATCCAAACCAAAGCTGTCATAGAGGAGGTATATAAAATTTACTGCTATCATCACGATGAAGCTAATGCCTCACTTAAGTCTTATGAAGCCCAGGAAGACATTCAGCAGCAGTTCAGAAGATGCATATCAGCACTCAAGAAAATATATGACCTTGAAGGGAAGCCTAATTTGCTTGACATGGGTTCTCTACTCATTAAACCAGTCCAGCGCATCATGAAATACCCACTTCTATTGGCTGAACTGTGGAATGCGACACCCACAGATCACCCTGACCACAGGCCTTTACAGGAAGCTCTTACAACAGTGAAGATCATAAACATCAACATTAATGAGTTTAAGAGGAGGAAAGACATAGTGCTGAAGTATAAGAGGAGTGATGACGAAACCTCACTGATGGGTAAACTTAACAAGTTCAACATTCATTCCATCAGGAAAAAATCTGACCGCCTGACCAGCTATTTTAAAATTCTCACTGGTGTCGAGCCACAGGTGAGAGATGAAGCTTTTGACAAGGAGGAAAAACTTTTCCGTAACCTTGAGAAAGCCGTGAGGCAGTTAGTGAAAAACATCAGCTGTTACTTGCTCTATACACAGGAGATGATATCAGTTGCTGTTCAAAATGCACAGGATCTTGAATCTATAATGAAGGATCCGGATAAAATAGACACAAATGGCTTTCATCAAAAGAAGAATGGCAACGACCCATACAAACACTTTAAAGATCACATGGAGCATTTGGTTGTGGCTCCTCTGTCTAGCCTGCTGGGAATGTTTGCGTCGCCGCAGAAGCTGATACAGAAGCGTTATGATAAACTGTTGGACTACTGCAGTCAGCTGGATTCCCGATCTTCAAACGAGGAACAGGGCCTTGCTAAAAGAGATTACGAGGCCCTCAATGCTCAGCTGCTAGAGGAGCTGCAATGCTTCAACCAAGCCGCCAGGACCATACTCACCAACTGCTTGATTTGTATAGTGAAATTAATACGAAAGCTGATGGACGCAGCTCAACCGCCTGTCCAACAGCTACCGGTTCCCTTGTCAAACTTCAATGAAGTCCAAAATTCTATCATGGAAGAGCTGAGCAACCTTGGATTCTTCAAAGAAAATTCCCAAAAGCTGATGGAGCGCAAAGTGAGCTTTGAGAAACGGGAAAAGAAAATGGCTCCAGAGATCCTCAGACAGACAGAGGAACAGAGGGCTCGGCTCCTGGAAGAGTATCCTGTGAAACAGCTCTACCAACTCAAGCGCAACTGCAATGCCTGTCAGGAAAAAGACATCAGCCTGCTGGAGGGAGAGCTGGTGGCTCTGCTGGAGGACAGAGACCCGATGGGCAGCAGCAGCCGCTGGCTAGTGCACACTGGGAgtgtgCAGGGATATGTGTATTCCTCATTCCTGAAGGCTTATAACCCCCAGCGGGAGGTGACGGAGAGGCCGGATGACTTTGACAATCTGAGTCTGTTTGTGTCGGCCAGCAGAAGCAGCAGCATGAGGAGCTTTAGCACTTCAGACAGTGTGTCTCCCCAGTCTGCACCACAGGATGAGCTGGACACCTCAGATGACCAACATTTCTATGCCGTTTATGCATTCAAGGCTCGCTGTGAACAAGAGCTCACACTTCAGGAGTACCAACACGTTCGTATCCTTCAGTTTTCAGATCTCGGCGGAAACAAAGACTGGTGGCTTGCTGAATCTAATGGACAGAAAGGCTACGTTCCAGCAAACTACCTTGGAAAGATGTCATACGCCTAAAGCTATTTTTTACATGCAATATTTAAAagtgaagttttattttttttttaaatatgaaggtAACTGCTTAATGAAGGCCAATCATGCACAACCCTTTTGCACTACAAATGATGCTACCAACAGTGTTTGCTTAAATTCTATACAAATTATCAacttaatcagaaaaaaaaaatatatatatatattttgtgtaaatacaatgataataatatatgaaaaaagctctattgtgaataaaatatttataaccatttaaaaaatgtcCTTGTTTGTTTGTGAGGGGAGGTACAGGTACAAGTACAGGTAtatcaaatatctcatttttaTATAATGATGAGATAGTGGATGTGTTCTGCTAAACATGGTCAAATCTGAAATACTTCtattttgcaaataaataattaaacattaaaagaaccAAAGCAATAAAAAAAGGTCACCCAAAAATT

Function

symbol description
arhgef38 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in Golgi stack and cell junction. Orthologous to human ARHGEF38 (Rho guanine nucleotide exchange factor 38).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090313-83 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in Golgi stack and cell junction. Orthologous to human ARHGEF38 (Rho guanine nucleotide exchange factor 38).

Ensembl:

ensembl_id ENSDARG00000079377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000522 True 2764 mRNA 0.43 14 26411496 26437820

Neighbor

gene id symbol gene type direction distance location
XLOC_000318 tet2 coding upstream 9450 26356205 ~ 26402046 (+)
XLOC_000317 mtap coding upstream 283552 26110985 ~ 26127944 (+)
XLOC_000316 toporsa coding upstream 301535 26105141 ~ 26109961 (+)
XLOC_000315 ndufb6 coding upstream 308264 26099250 ~ 26103232 (+)
XLOC_000314 mxd4 coding upstream 314924 26071869 ~ 26096572 (+)
XLOC_000320 g3bp2 coding downstream 7166 26444986 ~ 26466002 (+)
XLOC_000321 uso1 coding downstream 29251 26467071 ~ 26509316 (+)
XLOC_000322 AL954695.2 coding downstream 113214 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 coding downstream 139468 26577288 ~ 26584593 (+)
XLOC_000324 coro2a coding downstream 167245 26605065 ~ 26654311 (+)
XLOC_000308 NA non-coding upstream 689794 25719653 ~ 25721702 (+)
XLOC_000305 NA non-coding upstream 858197 25550053 ~ 25553299 (+)
XLOC_000304 NA non-coding upstream 968795 25440037 ~ 25442701 (+)
XLOC_000301 BX005016.1 non-coding upstream 1291291 25120089 ~ 25120205 (+)
XLOC_000300 NA non-coding upstream 1811508 24596326 ~ 24599988 (+)
XLOC_000325 NA non-coding downstream 226869 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 302295 26740115 ~ 26741149 (+)
XLOC_000335 NA non-coding downstream 2034379 28472199 ~ 28473413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10938720_10949086 ARHGEF38 coding CI01000300 null 10937714 ~ 10949231 (+)