RNA id: TCONS_00000533


Basic Information

Item Value
RNA id TCONS_00000533
length 2291
lncRNA type lincRNA
GC content 0.44
exon number 9
gene id XLOC_000322
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26551034 ~ 26554839 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACAGCAGATCCGGCCCGTCCTGAGTCCCCAACGGCCCTGACAGGTCATGTTGATACTGAGCTGGTGTGTCTACCAGGCCAGGTCTGGGAAGATCCTCAGCCAATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTTCGTCTGTTCAACACACCTCTAAAATGGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGCAACGCGCCCTTTCCTGTGCTGTGACACAGATATAGTCCAGCAATTTACACCACGACCTGAGCCAGAGCCGGAGTCCGAGCCAGAGTCCGATTTTGAGTCCGAAATCCGCTGACCCTGAGTCAGTATGTCTGCCAGGCCCGGCTCCTAAAGAGCCTAAAGAGGCTTCTGGACCCACTCGTAgattTGATCTGTCTGATTTTGAAGTAGACAACATGATTGGAGAAGGAGCTTTTGGCAAGGTGTTTGTGGCATCTCACAAACTTCGTAAAAGTGAAAAGGTTGCCCTGAAGTTTATGAACAAGCTTAAACAGGACCAATATCTCAACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTAAGGTTGATGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGATTGAGAATGAGAGCAGCTTCCTTCTCATCTTGGAGTACCCAGAGCAAAGCCGGACTTTGGCTGATTACATCACATTGACATTGCGAATTAGTGAAAAGCGAGCACGCCGGTTAATTCGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGTGATATACACACAGAGAACATCCTGGTGACGAAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTCAGCCAATTACCAGCGAGCCTTTCAGCAGCGATAATTATCGAGGAGCCAGTGGTATCACGCCACCTGAGGTTTTCAGTGATCCCACATTCTATGCTGACCCGGCAAACATTTGGGAAATAGGCAACGTGCTGTATGAAATATTGCATGCAGAATTGCCCTTTTCTGACAAAGATTCAATAATGTTTGCATCCCTTGAGACACACCCCAGGTTATCTACAGCATGCCAGAACCTGCTTTCCCAGTGTTTGGCCCGATGTCCACATCAGCGCCTGCAGTTACATCAGTTAGAAAAGCACCGGTGGTTCAATCCAAAGGCCCCAAATCCTGCGCAGCAGTTAGCCAAAAGGAGaaaacaCTAAAGAAGCGAGAAAGAGGAGAGCAGCATTTCCAGAAATTTCACAAGACTATTAAAGTTATTAATtactccctcatgtcattccaaacccctaaGACCTTAATTTTCTTCAGTGTCAGTTCATGACGTGTGTTGATGAGAGCTCTGTCCTGCACTGTATGtgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgGTCTCTTCTGAACATGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttctgttcTCAATATGAACTAAACATGAATATGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtgcccaaccgagactggtttctctcgaggtttttttccttcacttttgtcaaatggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggactttcagcagtgacaattaaactacactgaactgaactgaacttcaactgtgaaaactggactgacacagttttaatttacttctatgttaagctgctttgacacaatctacattgtaaaagcgctatagaaatgaagatgaattgaactgaattaatgatgaaaCTCCATCAGGAAATCCAGTGCTGTCAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCAACTATTTTCTACCTCATAAATGAATCTGGTGTTCTGTCATAAGAGAGActgattgttttataattaagtgttcatgattgttttgtaatgaattgttctttgaattgttttgtgatgaattgcttttatatattgttaataattccAATAAAATCCTGTGAATCAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152506

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000532 lncRNA upstream 54104 26495641 ~ 26496930 (+) True XLOC_000321
TCONS_00000530 lncRNA upstream 76654 26467253 ~ 26474380 (+) False XLOC_000321
TCONS_00000525 lncRNA upstream 77180 26467071 ~ 26473854 (+) False XLOC_000321
TCONS_00000514 lncRNA upstream 450009 26099293 ~ 26101025 (+) True XLOC_000315
TCONS_00000510 lncRNA upstream 701799 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000534 lncRNA downstream 22449 26577288 ~ 26584593 (+) False XLOC_000323
TCONS_00002840 lncRNA downstream 22648 26577487 ~ 26583067 (+) False XLOC_000323
TCONS_00002841 lncRNA downstream 25249 26580088 ~ 26583460 (+) False XLOC_000323
TCONS_00003076 lncRNA downstream 25345 26580184 ~ 26583067 (+) True XLOC_000323
TCONS_00000536 lncRNA downstream 50375 26605214 ~ 26627687 (+) False XLOC_000324
TCONS_00000529 mRNA upstream 41718 26467232 ~ 26509316 (+) False XLOC_000321
TCONS_00000528 mRNA upstream 41718 26467232 ~ 26509316 (+) False XLOC_000321
TCONS_00000526 mRNA upstream 42890 26467071 ~ 26508144 (+) False XLOC_000321
TCONS_00000531 mRNA upstream 53028 26480890 ~ 26498006 (+) False XLOC_000321
TCONS_00000527 mRNA upstream 70328 26467082 ~ 26480706 (+) False XLOC_000321
TCONS_00000535 mRNA downstream 50226 26605065 ~ 26654311 (+) False XLOC_000324
TCONS_00000537 mRNA downstream 67375 26622214 ~ 26653252 (+) False XLOC_000324
TCONS_00000538 mRNA downstream 67410 26622249 ~ 26640898 (+) False XLOC_000324
TCONS_00000539 mRNA downstream 71985 26626824 ~ 26654309 (+) False XLOC_000324
TCONS_00000541 mRNA downstream 113033 26667872 ~ 26671210 (+) False XLOC_000325
TCONS_00000518 other upstream 431410 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1430829 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 2166337 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2436476 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2684069 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 1158510 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1422531 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1429554 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2513823 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 3276920 29831759 ~ 29860373 (+) False XLOC_000356

Expression Profile

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