Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000528 |
| length | 4910 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 25 |
| gene id | XLOC_000321 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 26467071 ~ 26509316 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0048193 | Golgi vesicle transport | biological_process |
| GO:0048211 | Golgi vesicle docking | biological_process |
| GO:0042147 | retrograde transport, endosome to Golgi | biological_process |
| GO:0030163 | protein catabolic process | biological_process |
| GO:0016482 | cytosolic transport | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0043632 | modification-dependent macromolecule catabolic process | biological_process |
| GO:0046907 | intracellular transport | biological_process |
| GO:0048280 | vesicle fusion with Golgi apparatus | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0010498 | proteasomal protein catabolic process | biological_process |
| GO:0061025 | membrane fusion | biological_process |
| GO:0019941 | modification-dependent protein catabolic process | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0045056 | transcytosis | biological_process |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0044431 | obsolete Golgi apparatus part | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0012505 | endomembrane system | cellular_component |
| GO:0012507 | ER to Golgi transport vesicle membrane | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0099023 | vesicle tethering complex | cellular_component |
| GO:0033596 | TSC1-TSC2 complex | cellular_component |
| GO:0030906 | retromer, cargo-selective complex | cellular_component |
| GO:0034399 | nuclear periphery | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0019787 | ubiquitin-like protein transferase activity | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-040426-688 | Predicted to be involved in several processes, including Golgi vesicle transport; intracellular protein transport; and transcytosis. Predicted to act upstream of or within vesicle fusion with Golgi apparatus. Predicted to be located in Golgi membrane. Predicted to be active in ER to Golgi transport vesicle membrane; Golgi stack; and endoplasmic reticulum. Is expressed in notochord. Orthologous to human USO1 (USO1 vesicle transport factor). |
| ensembl_id | ENSDART00000011809 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000514 | lncRNA | upstream | 366207 | 26099293 ~ 26101025 (+) | True | XLOC_000315 |
| TCONS_00000510 | lncRNA | upstream | 617997 | 25848615 ~ 25849235 (+) | True | XLOC_000312 |
| TCONS_00000508 | lncRNA | upstream | 654273 | 25804642 ~ 25812959 (+) | True | XLOC_000311 |
| TCONS_00000505 | lncRNA | upstream | 674519 | 25783801 ~ 25792713 (+) | False | XLOC_000310 |
| TCONS_00000503 | lncRNA | upstream | 745530 | 25719653 ~ 25721702 (+) | True | XLOC_000308 |
| TCONS_00000533 | lncRNA | downstream | 41718 | 26551034 ~ 26554839 (+) | False | XLOC_000322 |
| TCONS_00003075 | lncRNA | downstream | 42358 | 26551674 ~ 26553638 (+) | False | XLOC_000322 |
| TCONS_00002839 | lncRNA | downstream | 42701 | 26552017 ~ 26553895 (+) | True | XLOC_000322 |
| TCONS_00000534 | lncRNA | downstream | 67972 | 26577288 ~ 26584593 (+) | False | XLOC_000323 |
| TCONS_00002840 | lncRNA | downstream | 68171 | 26577487 ~ 26583067 (+) | False | XLOC_000323 |
| TCONS_00000524 | mRNA | upstream | 1230 | 26445615 ~ 26466002 (+) | True | XLOC_000320 |
| TCONS_00000523 | mRNA | upstream | 1803 | 26444986 ~ 26465429 (+) | False | XLOC_000320 |
| TCONS_00000522 | mRNA | upstream | 29412 | 26411496 ~ 26437820 (+) | True | XLOC_000319 |
| TCONS_00000520 | mRNA | upstream | 65186 | 26356205 ~ 26402046 (+) | False | XLOC_000318 |
| TCONS_00000535 | mRNA | downstream | 95749 | 26605065 ~ 26654311 (+) | False | XLOC_000324 |
| TCONS_00000537 | mRNA | downstream | 112898 | 26622214 ~ 26653252 (+) | False | XLOC_000324 |
| TCONS_00000538 | mRNA | downstream | 112933 | 26622249 ~ 26640898 (+) | False | XLOC_000324 |
| TCONS_00000539 | mRNA | downstream | 117508 | 26626824 ~ 26654309 (+) | False | XLOC_000324 |
| TCONS_00000541 | mRNA | downstream | 158556 | 26667872 ~ 26671210 (+) | False | XLOC_000325 |
| TCONS_00000518 | other | upstream | 347608 | 26111385 ~ 26119624 (+) | True | XLOC_000317 |
| TCONS_00000495 | other | upstream | 1347027 | 25120089 ~ 25120205 (+) | True | XLOC_000301 |
| TCONS_00000490 | other | upstream | 2082535 | 24382967 ~ 24384697 (+) | True | XLOC_000295 |
| TCONS_00000480 | other | upstream | 2352674 | 24114525 ~ 24114558 (+) | True | XLOC_000287 |
| TCONS_00000478 | other | upstream | 2600267 | 23866878 ~ 23866965 (+) | True | XLOC_000285 |
| TCONS_00000557 | other | downstream | 1204033 | 27713349 ~ 27730980 (+) | False | XLOC_000329 |
| TCONS_00000565 | other | downstream | 1468054 | 27977370 ~ 28001937 (+) | False | XLOC_000332 |
| TCONS_00000567 | other | downstream | 1475077 | 27984393 ~ 27995611 (+) | True | XLOC_000332 |
| TCONS_00000579 | other | downstream | 2559346 | 29068662 ~ 29080336 (+) | False | XLOC_000337 |
| TCONS_00000608 | other | downstream | 3322443 | 29831759 ~ 29860373 (+) | False | XLOC_000356 |
