RNA id: TCONS_00002841


Basic Information

Item Value
RNA id TCONS_00002841
length 927
lncRNA type inter_gene
GC content 0.45
exon number 8
gene id XLOC_000323
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26577288 ~ 26584593 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCAAAGGATTGGAGTCATCTATTTGATCCGTTTCATACCAGACAATCCAAtgtttcaggattTGATTTGTCTGATTTTGAAGTAGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGTAAAAGTGAAAAGGTTGCCCTGAAGTTTATCAACAAGAATGAAGACGACCGTTATCTTGACATTgatgGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGATGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGGTTGAGTATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATGCCAGACCTTGGATCAGTACATCAACGATACAGTGGACGTTGGTGAAAAGCGAGCACGCCAGTTAATGTGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGAGATATCCACACGGAGAACATCCTGGTGACTCAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCGATGATTATCGAGGAGCTATTATATGCACGCCACCTGAGATTTTCATGGGCCCCATATTCCATGCTGACCCAGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATATTGCATGCAGATTTGCCCTTTGATGACGAAGATTCAATAATGTTTCAATCCGCTGAGATACGCCCCAGGTTATCTACAGAATGCCAGGACATGATTTCCCAGTGTTTCATCCGTAATCCAGTTAACCGGCTAAAGTTACATGAGGTAGAAGAGCACCAGTGGATCAATCCAAAGACCCCAAATCCTGTGCTGCAGTTAGAAAAGaaaacaCTAAAGAAGCGAGAAAGctcACTGCTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000533 lncRNA upstream 25249 26551034 ~ 26554839 (+) False XLOC_000322
TCONS_00002839 lncRNA upstream 26193 26552017 ~ 26553895 (+) True XLOC_000322
TCONS_00003075 lncRNA upstream 26450 26551674 ~ 26553638 (+) False XLOC_000322
TCONS_00000532 lncRNA upstream 83158 26495641 ~ 26496930 (+) True XLOC_000321
TCONS_00000530 lncRNA upstream 105708 26467253 ~ 26474380 (+) False XLOC_000321
TCONS_00000536 lncRNA downstream 21754 26605214 ~ 26627687 (+) False XLOC_000324
TCONS_00000540 lncRNA downstream 65567 26649027 ~ 26651227 (+) True XLOC_000324
TCONS_00003077 lncRNA downstream 81229 26664689 ~ 26670103 (+) False XLOC_000325
TCONS_00000545 lncRNA downstream 84566 26668026 ~ 26669885 (+) True XLOC_000325
TCONS_00003078 lncRNA downstream 156655 26740115 ~ 26741149 (+) True XLOC_000327
TCONS_00000529 mRNA upstream 70772 26467232 ~ 26509316 (+) False XLOC_000321
TCONS_00000528 mRNA upstream 70772 26467232 ~ 26509316 (+) False XLOC_000321
TCONS_00000526 mRNA upstream 71944 26467071 ~ 26508144 (+) False XLOC_000321
TCONS_00000531 mRNA upstream 82082 26480890 ~ 26498006 (+) False XLOC_000321
TCONS_00000527 mRNA upstream 99382 26467082 ~ 26480706 (+) False XLOC_000321
TCONS_00000535 mRNA downstream 21605 26605065 ~ 26654311 (+) False XLOC_000324
TCONS_00000537 mRNA downstream 38754 26622214 ~ 26653252 (+) False XLOC_000324
TCONS_00000538 mRNA downstream 38789 26622249 ~ 26640898 (+) False XLOC_000324
TCONS_00000539 mRNA downstream 43364 26626824 ~ 26654309 (+) False XLOC_000324
TCONS_00000541 mRNA downstream 84412 26667872 ~ 26671210 (+) False XLOC_000325
TCONS_00000518 other upstream 460464 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1459883 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 2195391 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2465530 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2713123 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 1129889 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1393910 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1400933 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2485202 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 3248299 29831759 ~ 29860373 (+) False XLOC_000356

Expression Profile

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