RNA id: TCONS_00002831


Basic Information

Item Value
RNA id TCONS_00002831
length 690
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_000292
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24361993 ~ 24363690 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTTCGTGACGTCAATTTTAGAACCCTCGTTCTAGAATGCATATGCTGTAGGTCACCTCCAGCTTCCATCAGTTGGTGTACAGTAGTCGAGCAGTAGTGATTGCAGATTTATTATTGTCGATTATCTAGCGATTGATTAAACGATGAGGCTTTTTAGACATTATCGAGTACATCCAATGGTAGAGGTGCAGGAACCCCATTCCACTGCACCTGCACCACCCAACCCTGGCATTGATATGGAGGTCCAGGATGATCGTCCAGAAAATCCTGTTGAAACTCCTGTTGCCGGCGAGGGAACGAAGAGAAAATTGTGGAAAGTTGGATCTTTGTTTAAATGTCCTAAAGGACATGCAAAGAGCACCTCGGGTCACCAGCAACAACTGAACACTCGTCCAAGTGATGAGGCTCCCGTTGAAGCTGGTGAGGAAAACAAGGAAATAGAGAAAGTGGAGGAGAAGAATAGGAAGAAATGGTGGAGAAAATTCTTCAGATTTCAGAAAAGCAGCTCAAAGCGAGAGCAGCAGAAGAGTGAAGCCCATGAACCCGAAGAAGACAAGAAGGAAGCTCTTACCCTTGAAGAGCAAGAGAATGAAAAACTGAGGACAGCAGTATCCAGTGATGGTAAGTGACATGATCATGTCAGAAAGCATCATTTATACCCACATTTCAATTTCAGTTCAGTGATTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000484 lncRNA upstream 4032 24355523 ~ 24357961 (+) False XLOC_000291
TCONS_00000485 lncRNA upstream 5121 24355542 ~ 24356872 (+) True XLOC_000291
TCONS_00000481 lncRNA upstream 18259 24337062 ~ 24343734 (+) False XLOC_000290
TCONS_00000482 lncRNA upstream 18803 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00003070 lncRNA upstream 24201 24336980 ~ 24337792 (+) False XLOC_000290
TCONS_00003071 lncRNA downstream 98770 24462460 ~ 24463305 (+) True XLOC_000297
TCONS_00002833 lncRNA downstream 232636 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002832 lncRNA downstream 232636 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002834 lncRNA downstream 233203 24596893 ~ 24599988 (+) False XLOC_000300
TCONS_00002835 lncRNA downstream 233986 24597676 ~ 24599665 (+) True XLOC_000300
TCONS_00000483 mRNA upstream 2340 24355515 ~ 24359653 (+) False XLOC_000291
TCONS_00000479 mRNA upstream 283894 24076243 ~ 24078099 (+) True XLOC_000286
TCONS_00000477 mRNA upstream 449205 23784905 ~ 23912788 (+) False XLOC_000284
TCONS_00000486 mRNA downstream 1892 24365582 ~ 24367412 (+) False XLOC_000293
TCONS_00000487 mRNA downstream 2420 24366110 ~ 24367056 (+) True XLOC_000293
TCONS_00000488 mRNA downstream 12704 24376394 ~ 24380533 (+) True XLOC_000294
TCONS_00000489 mRNA downstream 18961 24382651 ~ 24385979 (+) False XLOC_000295
TCONS_00000491 mRNA downstream 23969 24387659 ~ 24391673 (+) True XLOC_000296
TCONS_00000480 other upstream 247435 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 495028 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 610780 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000467 other upstream 856890 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000457 other upstream 1082291 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000490 other downstream 19277 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000495 other downstream 756399 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000518 other downstream 1747695 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 3349659 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 3613680 27977370 ~ 28001937 (+) False XLOC_000332

Expression Profile

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