CI01000049_00326545_00329242


Basic Information

Item Value
gene id CI01000049_00326545_00329242
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 326320 ~ 329936 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_00326545_00329242.mRNA
GTATATAACCAGGGGGTTTTCTCCATTGAGGACGGCACACATCATTTAGGGATCTTTGTCTACTGTACCAGTCTCTATCAGCCTCCTACTCTCCTTCAGTCCACATCTTGTGCTCCGAAAATTTCCTCGACATCAGGAGCAAATAGCCACAGTCAGGCTCAAATCGCTGAGATTTGCCAGTCCACTTTTAGCTAATCGAAGTTGAGAGTTTCCAAGCCTGACATTATGGATATTGCCATCCAACACCCCTGGATCAGACGCACCATGGGCTACCCCACCCGGCTCTTCGATCAGTTCTTTGGAGAAGGCCTGTTCGATTATGACCTCTTCCCCTTTGCTGCCTCAACTATCAGCCCTTACTATCGACACTCACTCTTCCGCAACTTCCTGGACTCCTCCAACTCAGGCATCTCTGAGGTGAGGTCTGACAGAGACAAATTCACAGTGTACCTGGATGTGAAACACTTCTCTCCTGATGAGCTCAATGTCAAGGTGACAGATGACTATGTGGAGATCCAGGGCAAGCATGGAGAAAGACAGTTGTGTTTTTCTATTCAGTTCCTTTTCTATTTTTATCTCCATCCTCCCATCCCCTTAGCCACTTTTTCAGCATGGTGGGTTTATTCATGTTTCAGTAGCCTTAAGGGAGGCACAGATGAGGAAAAAGATGATCACGGCTACATCTCCCGTGAGTTCCACCGTCGCTACCGTCTGCCTTCCAATGTGGACCAATCTGCCATCACCTGCACACTGTCTGCTGATGGCCTGCTCACTCTTTGCGGACCCAAGACTGGTGGCCTAGACGTTGGCCGTGGAGACCGCACCATCCCCGTTACCCGCGAGGACAAGAGCAACTCAGGCTCCTCCTCCTAGACGGGCCGCACCCCACAGCCAGGTGGTGGTTTGGAGGTGTGAGTGGGGCTCACAGGGGGGTCTAGGCTTTAATTTCAGAGGGCATCTAAAGGTGGATTTAAGCAAATCCTTTATTTGTTTGTCATTAAACAAGCCCTTCCTCCCACTTCCACCTCAAAGGGTGTCAGTGTATATCTGGCCTAATACCTTCTTTCATTAGACTACACTAGCTAAAAATCTCCATAATCCACTATGATTGTTTTCATTTTTTTCATTACATGCTACTCACACAGGGAATGGATCAGGATGATTGGCTGGGGGTCTTAAAGAAAGAGGTGAAAAGATTTCATCACTCAACCCTCTACCCTCCTCTCTAGTCAGATGTTAAGCGACAAGCAGTCGTCATACTGGCGATATATTATGGGAGTAATTGTTATTTAAAAGCATAATCCTTTACTGTATAGGATCAATTGAAGAACCAAATGCTCTGAGGAAGGTTAACAAGGGGAGGTAGAGAGCTTGGTTTAAAATCGCCCTGTTTGAAGATTTCTGATCCGAGAGAGATTCCATCACTGGCACCAGTCAGACCTCCGTTTCCTCTCTTACCTGTGTCAAGACTTCTTTTCTAGATCTCTCTTGTCATTGACTCTTTCCTGTTTTGTAGGTTCTACTGATTACAGACTCCTCGGGGGTCTACTAAAAAGTGATTAAAAAA

Function

NR:

description
alpha-A crystallin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_00326545_00329242.mRNA True 1567 mRNA 0.47 4 326320 329936

Neighbor

gene id symbol gene type direction distance location
CI01000049_00301547_00320863 CBS, CBSA coding upstream 5202 301107 ~ 321118 (+)
CI01000049_00239838_00240443 RAB9A, RAB9 coding upstream 85823 238643 ~ 240497 (+)
CI01000049_00234282_00235460 NA coding upstream 90782 234046 ~ 235538 (+)
CI01000049_00193856_00195437 NA coding upstream 130782 193656 ~ 195845 (+)
CI01000049_00164105_00165412 NA coding upstream 160833 164053 ~ 165487 (+)
CI01000049_00350921_00371213 NA coding downstream 20092 350028 ~ 371290 (+)
CI01000049_00372677_00374333 UBE2A.L, UBE2A, UBE2B, UBE2AL, BRAFLDRAFT_128294 coding downstream 41853 371789 ~ 374909 (+)
CI01000049_00379082_00388164 CARS2 coding downstream 49037 378973 ~ 388410 (+)
CI01000049_00389394_00392865 NA coding downstream 59458 389394 ~ 393925 (+)
CI01000049_00439527_00443722 IRS2A coding downstream 109101 439037 ~ 447286 (+)
G205371 NA non-coding upstream 118864 207207 ~ 207456 (+)
G205370 NA non-coding upstream 119159 206954 ~ 207161 (+)
CI01000049_00087904_00099724 NA non-coding upstream 224884 87852 ~ 101436 (+)
G205337 NA non-coding upstream 273782 52301 ~ 52538 (+)
G205327 NA non-coding downstream 68196 398132 ~ 400163 (+)
G205408 NA non-coding downstream 72603 402539 ~ 403029 (+)
G205752 NA non-coding downstream 281625 611561 ~ 611811 (+)
G205768 NA non-coding downstream 302781 632717 ~ 633195 (+)
CI01000049_01840330_01843844 FGF8B other downstream 1509879 1839815 ~ 1844077 (+)
G207888 NA other downstream 3294066 3624002 ~ 3624311 (+)
G208074 NA other downstream 3547460 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 4143589 4473662 ~ 4476270 (+)
G209660 NA other downstream 6548197 6878133 ~ 6882030 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000338 cryaa coding NC_007112.7 CM002885.2 29096881 ~ 29100923 (+)