CI01000049_00389394_00392865


Basic Information

Item Value
gene id CI01000049_00389394_00392865
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 389394 ~ 393925 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_00389394_00392865.mRNA
ATGCCTCCACCTGGGAAAATGAGAAAGCCCGTTATTAAAATGGTCGTCTTAGGAGACATGAATGTAGGGAAAACGTCCCTGCTGCACAGGTACATAGAGAGAAACTTCAAGGACACCTTAAGCACAATTGGTGGAGCATTTTTCTTGAAGCAGTGGGGTCCATACAACATCTCCATCTGGGATACAGCGGGTCGTGAACAGTTCCATGGTCTGGGCTCCATGTATTGTCGTGGCGCTGCAGCCATCATTCTAACGTATGATGTCACAAACTGGCAGAGCTTCGTAGAGCTTGAAGATCGCTTCCTCTCTCTCACTGACTCTGCCAATGATGATAGCATATTTGCCATAGTGGGCAACAAAGCAGACCTCACTGACCCTCAAGCCCAAGTTATGACCCCAGAAGAAGTCAGGGCAGAAGAGGGATGTGTACTTCCCCTTTCATCCTGCCCCACACCCCCAGATTTTCCTTTGCACAAACAGGTGAATCAGGATGATGCCATAGCACTTTACAACCGCATAATTCACCATAAGTCACTAGAGGGCATCAGTCCACCAGCAGAGAAGATGTGCTTCGAGACAAGTGCTAAGACTGGGTTTAATGTAGATGTTATGTTCGAGACACTCTTTGATCTGGTGTTGCCATCCATCATTCAAAAACGCTCCCAAAATGAGTCGCCCACATTGTGTTTGGAGGACTATAATGAAGAGGGAAGGAAGAGCAAAGGGGACTGTTGCAGATGATTACAGAACTGTTTACTCCAGTAAATCTTGTACGTTGTCACAGTAAACAGTGGCTTATTGGTCACTGTGTGTGTGTGTGTGTGTGTGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTTTATATCTCTGAGATAATCTTGTTTTTCATAGATAGAACACAAAGACTTTGAACTTAAGTTACTCAGTGTTTTGGCCCTCAAGTTGTTCATGTTCTTCTGAACACGATAAATACAAAGGTGTGTCAAAGAAATCCAAATATACATTGTTTACAGTACCATACTTTTTAATATTTTTTAAAAATTATTTTATTTTGAATTAACACTGTTAAATTATTAAAAAAAAAAAAAAATGGTATTCATATTATTTGTGATTGTCATTTACTAAAGGTTTATGAATACAATTATCACTCAACAAGCAAGTTGTTAATAGGTTTTTCACTTTCACTCTTTTCCACTTTTACAGTCTGCTGTCATTACAATTCTTTGCACTCATTTAAAACTGGGTCATCCTTGTTTTTTGTGCAATAATGTTACTACAATGTCTCCCCGCTAGAGGTCGCATTACACTGAGAAAAGGCTAAAGGTTAAAAAGCATGCATGGTTGCATGGCGTGCTTATGTGTAATTATAGTAGCAAGAATCGAACAGAAGTTGTTGAATAGAACACACTGAATCCTAAACATTCATTGGAAATCGAAATATGGGCTCATTGCATTATGACACACTAATGGCAATTGTAATCAGTAGGTGCCCTTTAATTACTTTGTGTTGTCAAGTCACACTCATTTGTTTGTGCCTTACTTATGAAACAATCATATATATACCCTAACATTTCCAAAAAAGTAGAATCGTTGTGTTGTTTATTATCTGGGTTTGTCTCTTGCTCCTGTCCAGATTCATCTGTGATGTAACATTTGTGCTGAATTAAACACTCATTAACTTGAGAAGCAGAGCCTGCAATGTGCATAGACCACACTTCACTTGCTGATGGAGCAGAGCTCCACATTCTCTTTCCCGCAACACCCATCTACAGTGAACGTTCACTTATAGAATGCATTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_00389394_00392865.mRNA True 1801 mRNA 0.40 2 389394 393925

Neighbor

gene id symbol gene type direction distance location
CI01000049_00379082_00388164 CARS2 coding upstream 984 378973 ~ 388410 (+)
CI01000049_00372677_00374333 UBE2A.L, UBE2A, UBE2B, UBE2AL, BRAFLDRAFT_128294 coding upstream 14485 371789 ~ 374909 (+)
CI01000049_00350921_00371213 NA coding upstream 18104 350028 ~ 371290 (+)
CI01000049_00326545_00329242 NA coding upstream 59458 326320 ~ 329936 (+)
CI01000049_00301547_00320863 CBS, CBSA coding upstream 68276 301107 ~ 321118 (+)
CI01000049_00439527_00443722 IRS2A coding downstream 45112 439037 ~ 447286 (+)
CI01000049_00502964_00505708 LIG4 coding downstream 109039 502964 ~ 505811 (+)
CI01000049_00514310_00583480 FAM155A coding downstream 120385 514310 ~ 583480 (+)
CI01000049_00593358_00626752 NA coding downstream 199052 592977 ~ 626925 (+)
CI01000049_00814236_00838530 RAPH1B, RAPH1 coding downstream 420311 814236 ~ 838530 (+)
G205371 NA non-coding upstream 181938 207207 ~ 207456 (+)
G205370 NA non-coding upstream 182233 206954 ~ 207161 (+)
CI01000049_00193856_00195437 NA non-coding upstream 193549 193656 ~ 195845 (+)
CI01000049_00087904_00099724 NA non-coding upstream 287958 87852 ~ 101436 (+)
G205337 NA non-coding upstream 336856 52301 ~ 52538 (+)
G205327 NA non-coding downstream 4207 398132 ~ 400163 (+)
G205408 NA non-coding downstream 8614 402539 ~ 403029 (+)
G205752 NA non-coding downstream 217636 611561 ~ 611811 (+)
G205768 NA non-coding downstream 238792 632717 ~ 633195 (+)
CI01000049_01840330_01843844 FGF8B other downstream 1445890 1839815 ~ 1844077 (+)
G207888 NA other downstream 3230077 3624002 ~ 3624311 (+)
G208074 NA other downstream 3483471 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 4079600 4473662 ~ 4476270 (+)
G209660 NA other downstream 6484208 6878133 ~ 6882030 (+)

Expression


Co-expression Network