CI01000048_00036432_00113057 (PSIP1)


Basic Information

Item Value
gene id CI01000048_00036432_00113057
gene name PSIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 36432 ~ 113057 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000048_00036432_00113057.mRNA
ATGGCTCGGGATTTCAAGCCTGGCGATTTGATTTTTGCAAAGATGAAGGGTTATCCCCACTGGCCTGCAAGGATCGATGAGATTCCAGATGGAGCCGTCAAACCGTCAAATATAAAGTTTCCTATCTTCTTTTTTGGCACTCATGAAACAGCATTCTTGGGTCCCAAAGACATCTTCCCCTATTTGACTAACAAAGACAAATATGGCAAACCAAACAAAAGGAAGGGTTTCAATGAAGGCTTGTGGGAGATTGAAAACAACCCTAAAGTGGAGCTTAACGGACATAAGATAATGAACTCTGGAGCAAGTTCTGTTAAGGAAATGAGCAGCAATCAAGAGGGAGATGATGAGAAAAGGAGAAAGTCATCTCAAGTATGTATCTGTCCATTTCTTAAAAAAAATAGTTATAATATCACTGGAGTGACAATGCAGATATTTTATATAATTTTTTGTGGTCCCCAGAACTCATCACAGAAAGATACCACAAATGTCTCTGCCAAAGCTAAAAGAGGAAGAAAAAGAAAGATTGAAGCTGAACAGGACTCTGATACAGAAAACTCAAGCCCCACTTCATGTGCTCCTGGTTTAGATGTATTATCAGCAGGTGGACCGATTCCGTTACTAAAGCGCAGAGGAAGAAAACCTAAAACAGAGAAATCTCTGCAGCTGCAACAACAGGCTTCAAAGGAACCACTGAGGTCAGGTGGAAAAGATGGAAAGAGAGATGATAGAAAAGGTGACAAGAGAAAAGAGGCCAGACTGCATAAGTTGCATGGGGAGATTAAAACATCTTTAAAGATTGATAACCTTGATGTGAGGAAATGTTTAGTTGCATTGGATGAGTTGAGTTCACTGCATATTACTACTCAGCATCTTCAGAGACACTGTGAACTCATAGCTACTCTTAAAAAGATCCGCAAGTTCAAAGCCAGCCAGGATGTGATGGACAAAGCCACAATGCTGTATAATAAGTTTAAAAGCATGTTTTTAATGGGAGAAGGAGAGTCAGTGCTCAGTCAAGTGCTCAATAAAAGTCTGACTGAACAGAGACAGTTTGAAGAAGCCAAGAGGGGAGTGCTAAAACACACAGAACAGATCAAAGAGCAGAAAGATACCAAGATTTTGAATGGAGACTTCAACCCTGAAGAGGATGCTGAGACAAAGATGGAGAAATTAGGA

Function

symbol description
psip1 Enables DNA-binding transcription factor binding activity; chromatin binding activity; and transcription coactivator activity. Involved in mRNA 5'-splice site recognition and positive regulation of transcription by RNA polymerase II. Located in heterochromatin; nuclear periphery; and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000048_00036432_00113057.mRNA True 1179 mRNA 0.40 12 36432 113057

Neighbor

gene id symbol gene type direction distance location
CI01000048_00005001_00005627 NA coding upstream 30415 5001 ~ 6017 (+)
CI01000048_00149401_00154452 NA coding downstream 36344 149401 ~ 154452 (+)
CI01000048_00261577_00264226 NA coding downstream 148343 261400 ~ 265542 (+)
CI01000048_00403297_00404487 NA coding downstream 290175 403232 ~ 404614 (+)
CI01000048_00425103_00519682 NA coding downstream 312046 425103 ~ 519890 (+)
CI01000048_00567988_00568484 NA coding downstream 454931 567988 ~ 569052 (+)
G204231 NA non-coding downstream 35623 148680 ~ 149277 (+)
G204373 NA non-coding downstream 103113 216170 ~ 224361 (+)
G204379 NA non-coding downstream 116689 229746 ~ 230049 (+)
G204390 NA non-coding downstream 142922 255979 ~ 256543 (+)
G204396 NA non-coding downstream 150117 263174 ~ 263476 (+)
G204409 NA other downstream 172213 285270 ~ 285747 (+)
G204472 NA other downstream 247968 361025 ~ 361661 (+)
CI01000048_00659494_00667971 NA other downstream 547662 659022 ~ 670072 (+)
G204824 NA other downstream 880398 993455 ~ 993969 (+)
CI01000048_01214358_01215546 NA other downstream 1101315 1214358 ~ 1215807 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000334 psip1a coding NC_007112.7 CM002885.2 28089703 ~ 28195267 (+)