XLOC_000280 (chrna9)


Basic Information

Item Value
gene id XLOC_000280
gene name chrna9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23406403 ~ 23417937 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000464
TTGTCAGATCGGCTCTCACTGTGAATGACAGGacaaacacactcaatcacacacaaatCCCAATGGACATCCCAGCACAACTCTGGAGAAAATAACACATAGCTTCTTTCTGCTTTTAAACAGAAGAACAAAGATCTCTAATGTCATAGGACATTGGGTCTTACATAGGTGAATTAtaaagttttgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgttcatGCTATGTGATACCTCAGCTCTTGTTCCAGAGAAGCAGTAAGAATGACATTCAGGCCTTCAGTGCTGTAGCTGGGCACACCACCACGCTCAACACTCAGATCGCGATGAGACTTCTAGCAATTTCTCCTTCCTGCCTTGCAGCAAATAACATTTAACAGCTATGAAGTGCAAATGAAGAGCAGTAGCAAATAATAACTGGtagatttaatataatttttgccATTCTTCTGAAAAATGAAGACCATATTTCTTGTGATTCACATTAGCTTGCTGCTACATGCTGTTTTCTCTGCTCAGGGTCGATTTGCTCAAAAACTGTTGAATGACCTAATGGAGGGCTATTCTAATGCTTTACGGCCTGTGGAGGACACAGACAAAGCCCTTAATGTCACTCTACAGATCACGCTTTCACAGATTAAAGATATGGATGAAAGAAACCAGGTGCTGACTACATATCTGTGGGTTCGTCAGATCTGGCATGATGCTTACTTGAGCTGGGATAAAGAAGAATATGATGGACTTGAGGTCATCCGCATTCCCAGCAATCTTGTTTGGAGACCAGACATAGTTTTATATAACAATGCAGATGAGGAGGACTCCTCAGGACCCCCAGACACTAATGTGGTGTTGAGATATAATGGTGAGATCACATGGGACTCCCCTGCCATCACCAAGAGTTCTTGTAAGGTGGACGTCTCCTATTTCCCCTTTGATAGTCAGGAATGCAACCTTACCTTTGGCTCCTGGACCTACAATGGCAACCAGGTGGACATTGCTATGGGCATGGAGAGTGGTGATCTTTCAGATTTTGTGGATAACGTGGAATGGGAGTGTCATGGCATGCCAGCTGTCAAGAATGTCATAATGTACGGTTGCTGCTCAGACCCGTACCCTGACATAACGTACACAGTCCTGCTCAAGCGGCGTTCTTCTTTCTACATCTTCAACCTGCTTCTGCCGTGTTTCCTCATCTCTTTCTTGGCTCCACTGGGCTTCTACCTGCCGGCTGATTCTGGGGAGAAGGTCTCGTTGGGGGTGACGGTCCTGCTGGCTCTGACTGTATTTCAGCTGATGGTAGCTGAAAGTATGCCACCTTCAGAAAGTGTTCCATTAATTGGAAAATATTACATTGCAACAATGACCATGATAACAGCCTCTACATCTTTGACTATATTCATTATGAATATACACTTCTGTGGAGCAGAAGCTAAACCGGTGCCCCACTGGGCCAAAGTTCTGATAATAGACTACATGTCAAAGATCTTCTTTGTGTATGAGGTAGGAGAGAACTGCACAACACCTGAAAGTGATCGAGGCCCATTTTTCTCTGAAGATCCACTGGCTAGCCTGGAGAGAGATGGGTATTTTGACAAAGGGTTTTATGAAGACTGTCACCTTGATGAGAGAATCCGCAGTCAGTTTAATGGGTACAGTCACAGAGACCACCGACATGGGAATGGGTACCATCACAAAAACAGCAGCTATCGGCAACATAGGAATGAGCAGCAAAGAAGAACCCGATCGTCATCAAATTCCCCTGTTCGACAGAGTTCCCATCATCCAAAATATACACACTTCATCGGTCGAGATGGAAGCGAAAAGCTCCCACTAACAAGTCAGGAAAAACTCAAAGACAGTGAAATCTCCATTCCAGAAAAAATTAACGGATACACATATGATCAGGGCAATGGGTATCTCAATGGAGTCGGCTACCTTCACGATAATGGCTACAGCAAAACCTTTGGAGCAGATAGCTACAATAAGACAACTACTGGCACAGGGTGTGTCTGTGGAAAACATCAGAAATTGGTGCGAAACATTGAGTACATAGCTAACTGTTTCAGAGAGCAGAGGGGACACCAGGCCAAAGGGGCCGAGTGGAAGAAGGTTGCCAAGGTGATGGACAGGTTCTTCATGTGGGTGTTTTTCATCATGGTCTTCCTCATGAGTATTCTTGTCTTGGCCAAGGCAACCTAGGAAAGTTTACAACTTGATGCAATTGGTAAATTACATAATAAGTAAATCTATGTGTCAAAAGACTGTAATTCTGTTCTGCAATCCTGTATTTGTTGGCAAATGCATTCAGATTAAAATGTGAATTACAgttacagcatgtgttttagttGTTTGAATGTCTCCCTTTCTTCATTGCTGTCTTTGTTTTTTCCGCTCCTTTTTTTGTAGTTGGTAAAAGTTAAAGAAATGGCATTAATATTTCAGGTGTAGAAGTGTTCCCACAAGTGTACATAGAGTAACACAATCTTTGTCCAGCATGGACACACATTAATAATGCACAATTAACCCCGCACATGCGTATGGGCAGACATTGACACTAACACACATTAAAAATGCA
>TCONS_00000465
CTGCTCAGGGTCGATTTGCTCAAAAACTGTTGAATGACCTAATGGAGGGCTATTCTAATGCTTTACGGCCTGTGGAGGACACAGACAAAGCCCTTAATGTCACTCTACAGATCACGCTTTCACAGATTAAAGATATGGATGAAAGAAACCAGGTGCTGACTACATATCTGTGGGTTCGTCAGATCTGGCATGATGCTTACTTGAGCTGGGATAAAGAAGAATATGATGGACTTGAGGTCATCCGCATTCCCAGCAATCTTGTTTGGAGACCAGACATAGTTTTATATAACAATGCAGATGAGGAGGACTCCTCAGGACCCCCAGACACTAATGTGGTGTTGAGATATAATGGTGAGATCACATGGGACTCCCCTGCCATCACCAAGAGTTCTTGTAAGGTGGACGTCTCCTATTTCCCCTTTGATAGTCAGGAATGCAACCTTACCTTTGGCTCCTGGACCTACAATGGCAACCAGGTGGACATTGCTATGGGCATGGAGAGTGGTGATCTTTCAGATTTTGTGGATAACGTGGAATGGGAGTGTCATGGCATGCCAGCTGTCAAGAATGTCATAATGTACGGTTGCTGCTCAGACCCGTACCCTGACATAACGTACACAGTCCTGCTCAAGCGGCGTTCTTCTTTCTACATCTTCAACCTGCTTCTGCCGTGTTTCCTCATCTCTTTCTTGGCTCCACTGGGCTTCTACCTGCCGGCTGATTCTGGGGAGAAGGTCTCGTTGGGGGTGACGGTCCTGCTGGCTCTGACTGTATTTCAGCTGATGGTAGCTGAAAGTATGCCACCTTCAGAAAGTGTTCCATTAATTGGAAAATATTACATTGCAACAATGACCATGATAACAGCCTCTACATCTTTGACTATATTCATTATGAATATACACTTCTGTGGAGCAGAAGCTAAACCGGTGCCCCACTGGGCCAAAGTTCTGATAATAGACTACATGTCAAAGATCTTCTTTGTGTATGAGGTAGGAGAGAACTGCACAACACCTGAAAGTGATCGAGGCCCATTTTTCTCTGAAGATCCACTGGCTAGCCTGGAGAGAGATGGGTATTTTGACAAAGGGTTTTATGAAGACTGTCACCTTGATGAGAGAATCCGCAGTCAGTTTAATGGGTACAGTCACAGAGACCACCGACATGGGAATGGGTACCATCACAAAAACAGCAGCTATCGGCAACATAGGAATGAGCAGCAAAGAAGAACCCGATCGTCATCAAATTCCCCTGTTCGACAGAGTTCCCATCATCCAAAATATACACACTTCATCGGTCGAGATGGAAGCGAAAAGCTCCCACTAACAAGTCAGGAAAAACTCAAAGACAGTGAAATCTCCATTCCAGAAAAAATTAACGGATACACATATGATCAGGGCAATGGGTATCTCAATGGAGTCGGCTACCTTCACGATAATGGCTACAGCAAAACCTTTGGAGCAGATAGCTACAATAAGACAACTACTGGCACAGGGTGTGTCTGTGGAAAACATCAGAAATTGGTGCGAAACATTGAGTACATAGCTAACTGTTTCAGAGAGCAGAGGGGACACCAGGCCAAAGGGGCCGAGTGGAAGAAGGTTGCCAAGGTGATGGACAGGTTCTTCATGTGGGTGTTTTTCATCATGGTCTTCCTCATGAGTATTCTTGTCTTGGCCAAGGCAACCTAGGAAAGTTTACAACTTGATGCAATTGGTAAATTACATAATAAGTAAATCTATGTGTCAAAAGACTGTAATTCTGTTCTGCAATCCTGTATTTGTTGGCAAATGCATTCAGATTAAAATGTGAATTACAgttacagcatgtgttttagttGTTTGAATGTCTCCCTTTCTTCATTGCTGTCTTTGTTTTTTCCGCTCCTTTTTTTGTAGTTGGTAAAAGTTAAAGAAATGGCATTAATATTTCAGGTGTAGAAGTGTTCCCACAAGTGTACATAGAGTAACACAATCTTTGTCCAGCATGGACACACATTAATAATGCACAATTAACCCCGCACATGCGTATGGGCAGACAT

Function

symbol description
chrna9 Enables acetylcholine-gated cation-selective channel activity. Acts upstream of or within positive regulation of cytosolic calcium ion concentration. Is integral component of plasma membrane. Part of acetylcholine-gated channel complex.

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05207 Chemical carcinogenesis - receptor activation
ko04040 Ion channels

Ensembl:

ensembl_id ENSDARG00000054680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000464 False 2618 mRNA 0.43 6 23406403 23417937
TCONS_00000465 True 2038 mRNA 0.44 5 23408622 23417911

Neighbor

gene id symbol gene type direction distance location
XLOC_000279 rhoh coding upstream 7411 23398405 ~ 23398992 (+)
XLOC_000278 n4bp2 coding upstream 9949 23372470 ~ 23396454 (+)
XLOC_000277 ube2kb coding upstream 83434 23311617 ~ 23322969 (+)
XLOC_000275 CR759875.1 coding upstream 113642 23261857 ~ 23292761 (+)
XLOC_000276 lias coding upstream 122935 23274710 ~ 23283468 (+)
XLOC_000281 NA coding downstream 71174 23489111 ~ 23506518 (+)
XLOC_000282 ncapg coding downstream 141541 23559478 ~ 23573230 (+)
XLOC_000283 CT573447.1 coding downstream 333162 23751099 ~ 23751213 (+)
XLOC_000284 slit2 coding downstream 365412 23783349 ~ 23912788 (+)
XLOC_000285 dre-mir-218a-2 coding downstream 448941 23866878 ~ 23866965 (+)
XLOC_000270 CR376846.1 non-coding upstream 885077 22521212 ~ 22521326 (+)
XLOC_000269 NA non-coding upstream 887649 22510734 ~ 22518754 (+)
XLOC_000263 NA non-coding upstream 1904919 21500645 ~ 21501484 (+)
XLOC_000262 NA non-coding upstream 2064750 21331425 ~ 21341653 (+)
XLOC_000260 CR762427.1 non-coding upstream 2151921 21254353 ~ 21254482 (+)
XLOC_000287 BX119984.1 non-coding downstream 696588 24114525 ~ 24114558 (+)
XLOC_000288 NA non-coding downstream 700430 24118367 ~ 24119067 (+)

Expression


Co-expression Network