RNA id: TCONS_00000464


Basic Information

Item Value
RNA id TCONS_00000464
length 2618
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_000280
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23406403 ~ 23417937 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCAGATCGGCTCTCACTGTGAATGACAGGacaaacacactcaatcacacacaaatCCCAATGGACATCCCAGCACAACTCTGGAGAAAATAACACATAGCTTCTTTCTGCTTTTAAACAGAAGAACAAAGATCTCTAATGTCATAGGACATTGGGTCTTACATAGGTGAATTAtaaagttttgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgttcatGCTATGTGATACCTCAGCTCTTGTTCCAGAGAAGCAGTAAGAATGACATTCAGGCCTTCAGTGCTGTAGCTGGGCACACCACCACGCTCAACACTCAGATCGCGATGAGACTTCTAGCAATTTCTCCTTCCTGCCTTGCAGCAAATAACATTTAACAGCTATGAAGTGCAAATGAAGAGCAGTAGCAAATAATAACTGGtagatttaatataatttttgccATTCTTCTGAAAAATGAAGACCATATTTCTTGTGATTCACATTAGCTTGCTGCTACATGCTGTTTTCTCTGCTCAGGGTCGATTTGCTCAAAAACTGTTGAATGACCTAATGGAGGGCTATTCTAATGCTTTACGGCCTGTGGAGGACACAGACAAAGCCCTTAATGTCACTCTACAGATCACGCTTTCACAGATTAAAGATATGGATGAAAGAAACCAGGTGCTGACTACATATCTGTGGGTTCGTCAGATCTGGCATGATGCTTACTTGAGCTGGGATAAAGAAGAATATGATGGACTTGAGGTCATCCGCATTCCCAGCAATCTTGTTTGGAGACCAGACATAGTTTTATATAACAATGCAGATGAGGAGGACTCCTCAGGACCCCCAGACACTAATGTGGTGTTGAGATATAATGGTGAGATCACATGGGACTCCCCTGCCATCACCAAGAGTTCTTGTAAGGTGGACGTCTCCTATTTCCCCTTTGATAGTCAGGAATGCAACCTTACCTTTGGCTCCTGGACCTACAATGGCAACCAGGTGGACATTGCTATGGGCATGGAGAGTGGTGATCTTTCAGATTTTGTGGATAACGTGGAATGGGAGTGTCATGGCATGCCAGCTGTCAAGAATGTCATAATGTACGGTTGCTGCTCAGACCCGTACCCTGACATAACGTACACAGTCCTGCTCAAGCGGCGTTCTTCTTTCTACATCTTCAACCTGCTTCTGCCGTGTTTCCTCATCTCTTTCTTGGCTCCACTGGGCTTCTACCTGCCGGCTGATTCTGGGGAGAAGGTCTCGTTGGGGGTGACGGTCCTGCTGGCTCTGACTGTATTTCAGCTGATGGTAGCTGAAAGTATGCCACCTTCAGAAAGTGTTCCATTAATTGGAAAATATTACATTGCAACAATGACCATGATAACAGCCTCTACATCTTTGACTATATTCATTATGAATATACACTTCTGTGGAGCAGAAGCTAAACCGGTGCCCCACTGGGCCAAAGTTCTGATAATAGACTACATGTCAAAGATCTTCTTTGTGTATGAGGTAGGAGAGAACTGCACAACACCTGAAAGTGATCGAGGCCCATTTTTCTCTGAAGATCCACTGGCTAGCCTGGAGAGAGATGGGTATTTTGACAAAGGGTTTTATGAAGACTGTCACCTTGATGAGAGAATCCGCAGTCAGTTTAATGGGTACAGTCACAGAGACCACCGACATGGGAATGGGTACCATCACAAAAACAGCAGCTATCGGCAACATAGGAATGAGCAGCAAAGAAGAACCCGATCGTCATCAAATTCCCCTGTTCGACAGAGTTCCCATCATCCAAAATATACACACTTCATCGGTCGAGATGGAAGCGAAAAGCTCCCACTAACAAGTCAGGAAAAACTCAAAGACAGTGAAATCTCCATTCCAGAAAAAATTAACGGATACACATATGATCAGGGCAATGGGTATCTCAATGGAGTCGGCTACCTTCACGATAATGGCTACAGCAAAACCTTTGGAGCAGATAGCTACAATAAGACAACTACTGGCACAGGGTGTGTCTGTGGAAAACATCAGAAATTGGTGCGAAACATTGAGTACATAGCTAACTGTTTCAGAGAGCAGAGGGGACACCAGGCCAAAGGGGCCGAGTGGAAGAAGGTTGCCAAGGTGATGGACAGGTTCTTCATGTGGGTGTTTTTCATCATGGTCTTCCTCATGAGTATTCTTGTCTTGGCCAAGGCAACCTAGGAAAGTTTACAACTTGATGCAATTGGTAAATTACATAATAAGTAAATCTATGTGTCAAAAGACTGTAATTCTGTTCTGCAATCCTGTATTTGTTGGCAAATGCATTCAGATTAAAATGTGAATTACAgttacagcatgtgttttagttGTTTGAATGTCTCCCTTTCTTCATTGCTGTCTTTGTTTTTTCCGCTCCTTTTTTTGTAGTTGGTAAAAGTTAAAGAAATGGCATTAATATTTCAGGTGTAGAAGTGTTCCCACAAGTGTACATAGAGTAACACAATCTTTGTCCAGCATGGACACACATTAATAATGCACAATTAACCCCGCACATGCGTATGGGCAGACATTGACACTAACACACATTAAAAATGCA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05207 Chemical carcinogenesis - receptor activation
ko04040 Ion channels

Ensembl:

ensembl_id ENSDART00000189921

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000462 lncRNA upstream 26193 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00003067 lncRNA upstream 887649 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA upstream 887649 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000439 lncRNA upstream 1452940 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1904919 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00000466 lncRNA downstream 71174 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 87729 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00002830 lncRNA downstream 700430 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 708443 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00003070 lncRNA downstream 919043 24336980 ~ 24337792 (+) False XLOC_000290
TCONS_00000463 mRNA upstream 7411 23398405 ~ 23398992 (+) True XLOC_000279
TCONS_00000460 mRNA upstream 9949 23372470 ~ 23396454 (+) False XLOC_000278
TCONS_00000461 mRNA upstream 12588 23372494 ~ 23393815 (+) False XLOC_000278
TCONS_00000459 mRNA upstream 83434 23311617 ~ 23322969 (+) True XLOC_000277
TCONS_00000458 mRNA upstream 83815 23311617 ~ 23322588 (+) False XLOC_000277
TCONS_00000469 mRNA downstream 141541 23559478 ~ 23573230 (+) False XLOC_000282
TCONS_00000470 mRNA downstream 142279 23560216 ~ 23572825 (+) False XLOC_000282
TCONS_00000471 mRNA downstream 145754 23563691 ~ 23572574 (+) True XLOC_000282
TCONS_00000473 mRNA downstream 365412 23783349 ~ 23910036 (+) False XLOC_000284
TCONS_00000477 mRNA downstream 366968 23784905 ~ 23912788 (+) False XLOC_000284
TCONS_00000457 other upstream 126701 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000444 other upstream 885077 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 1839802 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 2151921 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 3425416 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000467 other downstream 86397 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 333162 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 448941 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000480 other downstream 696588 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000490 other downstream 965030 24382967 ~ 24384697 (+) True XLOC_000295

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_09050912_09060586.mRNA False 2348 mRNA 0.43 6 CI01000300 9050912 ~ 9061185 (+)