Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000439 |
| length | 516 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 2 |
| gene id | XLOC_000266 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 21937201 ~ 21971913 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0035097 | histone methyltransferase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0032452 | histone demethylase activity | molecular_function |
| GO:0032454 | histone demethylase activity (H3-K9 specific) | molecular_function |
| GO:0051864 | histone demethylase activity (H3-K36 specific) | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070209-38 | Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Acts upstream of or within blood vessel morphogenesis. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in autistic disorder; breast cancer; carcinoma (multiple); head and neck cancer; and withdrawal disorder. Orthologous to human KDM4C (lysine demethylase 4C). |
| ensembl_id | ENSDART00000132090 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003066 | lncRNA | upstream | 449774 | 21500645 ~ 21501484 (+) | True | XLOC_000263 |
| TCONS_00003064 | lncRNA | upstream | 609605 | 21331425 ~ 21341653 (+) | False | XLOC_000262 |
| TCONS_00003065 | lncRNA | upstream | 609605 | 21331604 ~ 21341653 (+) | True | XLOC_000262 |
| TCONS_00003063 | lncRNA | upstream | 1012815 | 20936725 ~ 20938443 (+) | True | XLOC_000259 |
| TCONS_00003062 | lncRNA | upstream | 1803709 | 20146405 ~ 20147549 (+) | True | XLOC_000256 |
| TCONS_00003067 | lncRNA | downstream | 557271 | 22510734 ~ 22518754 (+) | False | XLOC_000269 |
| TCONS_00003068 | lncRNA | downstream | 557598 | 22511061 ~ 22518754 (+) | True | XLOC_000269 |
| TCONS_00000462 | lncRNA | downstream | 1425545 | 23379008 ~ 23380210 (+) | True | XLOC_000278 |
| TCONS_00000466 | lncRNA | downstream | 1535648 | 23489111 ~ 23506518 (+) | False | XLOC_000281 |
| TCONS_00000468 | lncRNA | downstream | 1552203 | 23505666 ~ 23506518 (+) | True | XLOC_000281 |
| TCONS_00000436 | mRNA | upstream | 135704 | 21725821 ~ 21815554 (+) | False | XLOC_000265 |
| TCONS_00000437 | mRNA | upstream | 135704 | 21731382 ~ 21815554 (+) | True | XLOC_000265 |
| TCONS_00000434 | mRNA | upstream | 378245 | 21563334 ~ 21573013 (+) | False | XLOC_000264 |
| TCONS_00000433 | mRNA | upstream | 384882 | 21563311 ~ 21566376 (+) | False | XLOC_000264 |
| TCONS_00000431 | mRNA | upstream | 638662 | 21309386 ~ 21312596 (+) | False | XLOC_000261 |
| TCONS_00000440 | mRNA | downstream | 49186 | 22002649 ~ 22222474 (+) | False | XLOC_000267 |
| TCONS_00000441 | mRNA | downstream | 49710 | 22003173 ~ 22235421 (+) | False | XLOC_000267 |
| TCONS_00000442 | mRNA | downstream | 220788 | 22174251 ~ 22179555 (+) | True | XLOC_000267 |
| TCONS_00000443 | mRNA | downstream | 473672 | 22427135 ~ 22428853 (+) | True | XLOC_000268 |
| TCONS_00000445 | mRNA | downstream | 701412 | 22654875 ~ 22665098 (+) | False | XLOC_000271 |
| TCONS_00000435 | other | upstream | 384657 | 21564506 ~ 21566601 (+) | True | XLOC_000264 |
| TCONS_00000430 | other | upstream | 696776 | 21254353 ~ 21254482 (+) | True | XLOC_000260 |
| TCONS_00000420 | other | upstream | 1970271 | 19975591 ~ 19980987 (+) | True | XLOC_000252 |
| TCONS_00000414 | other | upstream | 2132162 | 19814865 ~ 19819096 (+) | True | XLOC_000250 |
| TCONS_00000413 | other | upstream | 2135809 | 19808451 ~ 19815449 (+) | False | XLOC_000250 |
| TCONS_00000444 | other | downstream | 567749 | 22521212 ~ 22521326 (+) | True | XLOC_000270 |
| TCONS_00000457 | other | downstream | 1321459 | 23274922 ~ 23279702 (+) | True | XLOC_000276 |
| TCONS_00000467 | other | downstream | 1550871 | 23504334 ~ 23505103 (+) | False | XLOC_000281 |
| TCONS_00000472 | other | downstream | 1797636 | 23751099 ~ 23751213 (+) | True | XLOC_000283 |
| TCONS_00000478 | other | downstream | 1913415 | 23866878 ~ 23866965 (+) | True | XLOC_000285 |
