RNA id: TCONS_00000435


Basic Information

Item Value
RNA id TCONS_00000435
length 614
RNA type nonsense_mediated_decay
GC content 0.45
exon number 5
gene id XLOC_000264
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21563311 ~ 21573013 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACTGCAGTTTTCCTGAGCTCTTGTTCTGCTGGACTCTGAAGATCAAATCACATAGCATGAGAGAGATTTAGTCATACTCCAGTGTTTTGAGACAAGGATGACTGGCGGAAAGTGGCAGGACAGGGTGAAATCTGTGGAGCAGAGGGCATCATCCTTTCAGTCTTCTCCTTTGTCCTGTCCATACAAACCACGTCTCTCCCAGCCGTGGCAGCCATCCTCTATCTGGAGACTCTTCCCACGCCAGAATGCAGCCATTGCCTTTGCTCAGCACATTAAACAGGATGTGCACATATTTTCACTGGAGAAGGAAGGCAGTGATGCTGGACAGAGGATTTTCCTAGTGACCAGCTATAGTGAACTATGGCATTATTACAGCACTCACAGACATTCTCTGATGCACTGCTATGAAGTAATTCTGGAAGGGGCTGTCTGCAAACTCTACTTCGACTTAGAGTTTCATAAAGCCTCCAACAAAAATTTGGATGGAAAGATGATGGTTGCTAAACTAATTCAGGACGGTTTATTCATGATATCCTTCATCCTGCTTTGACCAACCTTAAAAAAAGCAATCCAGAGGCACCAGGAGAGAATAGAGATGATGTGGAAGGTAC

Function

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0009411 response to UV biological_process
GO:0042276 error-prone translesion synthesis biological_process
GO:0019985 translesion synthesis biological_process
GO:0043504 mitochondrial DNA repair biological_process
GO:0006264 mitochondrial DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005634 nucleus cellular_component
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003896 DNA primase activity molecular_function
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-051113-100 Predicted to enable chromatin binding activity; nucleotidyltransferase activity; and transition metal ion binding activity. Predicted to be involved in DNA metabolic process; mitochondrial DNA replication; and response to UV. Predicted to act upstream of or within DNA repair. Predicted to be located in replication fork. Predicted to be active in mitochondrial matrix and nucleus. Human ortholog(s) of this gene implicated in myopia. Orthologous to human PRIMPOL (primase and DNA directed polymerase).

Ensembl:

ensembl_id ENSDART00000146638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003066 lncRNA upstream 63022 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003064 lncRNA upstream 222853 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA upstream 222853 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003063 lncRNA upstream 626063 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003062 lncRNA upstream 1416957 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00000439 lncRNA downstream 384657 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003067 lncRNA downstream 944133 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA downstream 944460 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000462 lncRNA downstream 1812407 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 1922510 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000431 mRNA upstream 251910 21309386 ~ 21312596 (+) False XLOC_000261
TCONS_00000432 mRNA upstream 252418 21309404 ~ 21312088 (+) True XLOC_000261
TCONS_00000429 mRNA upstream 625994 20936711 ~ 20938512 (+) False XLOC_000259
TCONS_00000427 mRNA upstream 858210 20635387 ~ 20706296 (+) False XLOC_000258
TCONS_00000425 mRNA upstream 859427 20635214 ~ 20705079 (+) False XLOC_000258
TCONS_00000436 mRNA downstream 159220 21725821 ~ 21815554 (+) False XLOC_000265
TCONS_00000437 mRNA downstream 164781 21731382 ~ 21815554 (+) True XLOC_000265
TCONS_00000438 mRNA downstream 370600 21937201 ~ 21971913 (+) False XLOC_000266
TCONS_00000440 mRNA downstream 436048 22002649 ~ 22222474 (+) False XLOC_000267
TCONS_00000441 mRNA downstream 436572 22003173 ~ 22235421 (+) False XLOC_000267
TCONS_00000430 other upstream 310024 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 1583519 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 1745410 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 1749057 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000408 other upstream 1858674 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000444 other downstream 954611 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 1708321 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 1937733 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 2184498 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 2300277 23866878 ~ 23866965 (+) True XLOC_000285

Expression Profile

//