XLOC_000266 (kdm4c)


Basic Information

Item Value
gene id XLOC_000266
gene name kdm4c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21937201 ~ 21971913 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000438
GAGAAGAGAGAGCTGTCATGAAGTAGAACAGCTGGGGATTTAAAGGGACTGGACTGCGTGCCCACGATCACACTACACTGAGGTCAAGCCTCTGGGAGGCAGGAGAGAGTGGTCAGGATGGCAGGTGTTGGGGCAAGTGCCCCTGCAAACCCTGCCTGTAAAATCATGACCTTCAGACCCACCATGGAGGAGTTTAAGGATTTCAACCAGTACCTGGTTTATATGGAGTCTCAGGGAGCTCATCGTGCTGGTCTGGCCAAGGTAATTCCACCCAAGGGCTGGAAGCCACGTCGCAATTATGATGATATTGATGATTTTGTTATTCAAGCACCTATTCAGCAGATGGTAGCTGGCCAATCAGGACTCTTCACCCAGTACAACATCCAGAAGAAGCCGCTCACTGTGCAAGAATTCCGCAGACTGGCTAACAGTGACATGTACTGTACACCGCGCTATCTGAACTATGAAGACCTGGAGAGGAAGTATTGGAAGAATCTGACATTCGTCTCGCCCATATATGGTGCTGATGTGAGCGGCACACTCTATGATGAGGACATTGAAGAGTGGAACATTGGCCACTTGAATTCAGTCTTGGACGTGATCGAGGAGGACTGCGGTGTGTCCATCCAGGGAGTAAACACACCCTATCTCTACTTTGGGATGTGGAAAACCAGCTTTTCCTGGCACACAGAGGATATGGACCTCTACAGCATTAACTACCTGCACTTTGGCGAACCCAAATCCTGGTATGCCATCCCTCCAGAACATGGAAAGAGACTTGAGCGGCTTGCTATAGGTTTCtttccaaacagctttaaaagctGTGAGGCGTTCCTGAGACACAAGATGACACTGATATCCCCCTCTGTACTCAAGAAATACAGCATACCATTTGATAAGATAACACAGGAAGCGGGAGAGTTTATGATCACATTTCCTTATGGTTACCACGCTGGCTTTAACCACGGCTTCAACTGTGCTGAATCCACCAATTTCGCCAGTATCCGGTGGATAGATTATGGAAAACTGGCTACGCAGTGTACATGCAGTAAGGATATGGTGAAGATCTCCATGGATCCATTTGTTAGACGATTTCAGCCGGATCGATACGAGATGTGGACGCAAGGCAAAGATTCATGCTCCCTGGATCACACTCTGCCTACACCAAGCACTACACCAGAGCTGCAGAGCTGGCTTCAGAGACGGCGAAGGAAAACACCCTCCACCAGtctcCATGCGCCTCGTTCATGCTCCAAACGACTGAAGACGGTGGACTCTGCACCGGTAAAGGGAAGCGGTCGAAGGAGTAGATCAGCAGCCTTAACTGCTAAAAAcaaggaagaggaagaggaagaccCAGTGAAACACCAGAAAGAATCACAGTACTCAAGTGAATTAAAAGGGCTTGCTGGTCGACAAATGTGTGTTGTTAAAGTAACAAGAGTGGAGAGCGACTTGCTGGCACAGTCTACAAGACAAGTCAAAGAAGCTTCCCCTGAGCGACTCTTGACCCCTACTCTCACCACCACATCCAGCCAAAATGACCCTGATGCGGGCCACACAAGCTCCCAGACGTCTTTAATATTGGATGAAGGACAAGTATCCAAAAACACAAACTCCACCGCCCAGTCTGAGCCTGAATCAACCTCAGAGAGTGACATCATTGTGGATGTGACTCTAGGCTCAGAAAGAACTGCTGAGAATCCTAATCAAACATTAAACTGTGAATCTGTCTCAGAAACCATTGCACCTTCTATTCCTGTGACCCATTCACTTACACTCCACTCCACTGGTGCTACAGTTTTATTTTCGGAAAGTGATTCCCAACAAGCTAAAATTGAAACGGAAGAGACAGTCATTGATACCTTGACCGAGGACAGCATCGATTGCGGCACGTCAGCACTTTACAAGGAGCAAAGCTCAATCAGTCTAGACCCTGCTCTTCAGGGTTCAGAACCTTCCATGAATAGAACAAACTCTGAAATCCAAACTACGCCATTTTGTGAAATGCCTCTTCTAATGCCCGAGCTCATTGAAGAGAGAGTCAATCCTCAGTGTCTCGCACCTGAAATGCCCTCGCTGACTCTCGCTATCCGACCGGACTCCGCAAATCATCAACCTTACAACAGTGCACCCATCCTCCATTTGGAAAAATCACACTCACCTCCTGTTATAACGGATGAAGTGAGAGGTTGTTCTGAAAGAGTTTGTCCGGATTGGCCCTTTATTTTACCAAAAGAAGGTGTGAGCCAATCACATAAGTCAATCTCAGACAGCTTCAAAGCAAAACCAACATCTGCTTCCTTTGCTCCACAATGGGGGACGCCAGAGGAGTCCAAACAAGAAGGAAATATACACAAATGCACATCAACAGACCAGACCACTCAACATGAATCCGTTTCGAACTGTACAACCCCTACTCGCAGTATTTTGCAAAGTTCTGCAACAACACGCATGGATTTTATAGACTCTAAAATGATTGAAGGAGTGGGCAAAGAAACTTCTCGATGTATCGAAGAGCAGTCCAGCTCTCTCACGTCCTCCCAGAGCAACTTTGCAGAATCCAAACCCTTCACAATTTGGAAAAACCTCAGCTCCGATAACCCTGCGGTGCTCATCGAGAGTTTGCAGCCCGAGTTGGTAGTAGGTCTTACCGCAGACTATGCCCATGATTCGTTACCGTACACCATGTGGTCAGAGTCAGGGTGCCAACAAGAAAAGTTCTCAGATTCTCCAAACTCTTCACCTCACACCCAGACCTGGACCAACCTGGAGCCCATTCCCATGCAGTGTTCTGATACAGAAGTGTCTGAAAACGCACCCTTAGATCTTAAGCAGGAGAACGAGGAGGTGGAACCGGCTGAATCGTGCGAGCTGAATGAGCAGGCGGGCTCTCAGGAACCTCAGGAAAGAGAGTTTAAAATTCAGGAGTATTACAGAAGTGTGAAATCAGAACACGATGGGTCTGTGAGCGACTCCGATTCGTGTGAATCAGGAGATAAGGGTGCTGACAGCAGCAGTGAATCCAGTGAGGAGAACCCCATGAGTGATCCAGAGTATGTGGAAACGGGTCTGGAACCAGGGGAAGTCTGTACATATCATATGCAAACGGTTAAGAAGACTGCCAAGAGTTGGCGTCACCCCCTCAGAAAACCCACAGCGAGAGCAGTGCCCAGTGCTGTCAAACAGCAGGCTGCCAGCGATGATGAGGTTATAGAGGAGTGTGCGAGTGAAGAAGATGAGCCAGAAACTGAGGAATGGGCAAAACCATTAGTGCATCTCTGGCAACACAGAAAAGCCCATTTTCAGTATGAACGAGAATACAACATGACCGCTGCAAAAAACGCTCCACACTGTGCTGTCTGCACACTTTTCATGCCATACCATCAGCCTGAGAACTTGGAGGAGAGAAGGCCTGAGGTGTCAATGGGGTCATGTTCCCTGGACGCAGGCTCAAGATCACGACCTCTGATCCCTGAAATCTGCTTTGCGTACCAGGAGGGTCCATGCCCGTTGAACACACTACTGGAGGAAGATGGATCCAGCCCTCTTGTGGTCTGCAGCAGCTGCTGTGTTCAAGTTCATGCCAgttgctatggtgtttctGCTCAGGATGTTGGCCCAGTGTGGACTTGTGACCGGTGTGTGAGTGAAGATCTGGCAGCTGGATGTTGTTTGTGCAACCTGAGGGGAGGTGCATTAAAAAGAACCTCAGATGACAGATGGGTCCATGTCATGTGTGCGGTGGGGCTCCCTGAGGTGAAGTTCATTGATGTGGTGAAAAGAGCTCCTATTGACATCAGTGCCGTACCTGTACAGAGATATAAACTTaaGTGTATTTATTGCCGTAACAGGATAAAACGGCTGTCTGGAGCTTGTATTCAGTGCTCGTGTGGCCGTTGCCCGACCTCGTTCCATGTCACCTGTGCTCATGCAGCTGGAGTGCCCATGGAGCCTGATGATTGGCCGTATGTGGTCTTCATCACCTGTCACAGACACCAGTCACGGAGCTCCAGTGCTAAAGTAAAAGTTAGCAAAAGCGAATTAGAAGTGGGCCAGACGGTGATCTCCAAACACAAAAACCTCCGGTACTACAGCTCACGTATTACTCAGGTCACGGCCCAGACATTTTACGAGGTCATGTTCGATGACGGCTCCTTCAGCAATGATACATTCCCTGAAGACATTGTGAGCAGAGACTGTGCTTTGCTTGGCCCTCCTGAAGTTGGGGAGACAGTTCAGGTGAAGTGGCCTGATGGACTTTTATATGGAGCCAAATATCTTGGCTCGAACACTTCATATATGTATCAGgTGGAGTTTGAAGATGGATCCCAAGTATTGGCAAAGCGAGAGGACATTTACACACTCAATGAAGACCTGCCCAAAAAAGTCAAAGGTCGTTTGTCCACGGCATCCAGCATGCGTTTCCAGGATGCATTCTTCACCACACAAGGTGAAAGGAAAAGACGACGCACACCGAATTCTCGATTCCAGACGGATTACATTGCCCATATCAGTCCTCGAACCTTTGCCAGGTTGTCAGAAACCCGCAGTAAAGCCAACTAATGGAGTTAAAAGAGCCCTTAAATAAGAAAAGGAGCTGCTTTCAATTATGTTTGAAGATTGTACATCACTGAGATCAGGATTTTTCAAAGCGGCAAAAGTGGTCTCATATGTCAGGGACAAGAATGTTTTTCTAAATTAGAAGTTTTCCTGTTATATTTCAGAGGTTTTTTCTAGCCTCGAATGGTATTCTGTAGCATCGTACTCTTGTCATTTCCTTTCATCACTGCTGAGACTAATTTTACCcgcatgctttttttttgtaaatgatttgTCGTGTACCGTCATGCACCATTCCTAGTCACTGATGTTATTAGTGTTGAGCTTacaattgtataaataaaaaaaatgctactgATGTCCGGCAAAGCACATGTCACCTTTTACTTAAAATATTGATCTCTGTATTCATTTGGCATTCTTTCTTTTCTATGTGGTGctgctgaaaaaataaataaataaagaagtgtTTGCTTTGTGA
>TCONS_00000439
AACGCACCCTTAGATCTTAAGCAGGAGAACGAGGAGGTGGAACCGGCTGAATCGTGCGAGCTGAATGAGCAGGCGGGCTCTCAGGAACCTCAGGAAAGAGAGTTTAAAATTCAGGAGTATTACAGAAGTGTGAAATCAGAACACGATGGGTCTGTGAGCGACTCCGATTCGTGTGAATCAGGAGATAAGGGTGCTGACAGCAGCAGTGAATCCAGTGAGGAGAACCCCATGAGTGATCCAGAGTATGTGGAAACGGGTCTGGAACCAGGGGAAGTCTGTACATATCATATGCAAACGGTTAAGAAGACTGCCAAGAGTTGGCGTCACCCCCTCAGAAAACCCACAGCGAGAGCAGTGCCCAGTGCTGTCAAACAGCAGGCTGCCAGCGATGATGGTGGATGTTTCATTGTATTATGAGCATGAAAACACCTGCAGTTAAGGATAGGAATTGAATGAAACTCCACAGTTGGTTTTAtcaatgtgctttttaaaatagtatgtgCCATTGCAACTGTG

Function

symbol description
kdm4c Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Acts upstream of or within blood vessel morphogenesis. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in autistic disorder; breast cancer; carcinoma (multiple); head and neck cancer; and withdrawal disorder. Orthologous to human KDM4C (lysine demethylase 4C).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0035097 histone methyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0032452 histone demethylase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-38 Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Acts upstream of or within blood vessel morphogenesis. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in autistic disorder; breast cancer; carcinoma (multiple); head and neck cancer; and withdrawal disorder. Orthologous to human KDM4C (lysine demethylase 4C).

Ensembl:

ensembl_id ENSDARG00000061504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000438 False 5044 mRNA 0.47 22 21937201 21971913
TCONS_00000439 True 516 lncRNA 0.48 2 21951258 21953463

Neighbor

gene id symbol gene type direction distance location
XLOC_000265 pax5 coding upstream 121647 21725821 ~ 21815554 (+)
XLOC_000264 primpol coding upstream 364188 21563311 ~ 21573013 (+)
XLOC_000263 NA coding upstream 435717 21500645 ~ 21501484 (+)
XLOC_000262 NA coding upstream 595548 21331425 ~ 21341653 (+)
XLOC_000261 med28 coding upstream 624605 21309386 ~ 21312596 (+)
XLOC_000267 dnah6 coding downstream 30736 22002649 ~ 22235421 (+)
XLOC_000268 si:dkey-234d14.2 coding downstream 455222 22427135 ~ 22428853 (+)
XLOC_000269 NA coding downstream 538821 22510734 ~ 22518754 (+)
XLOC_000270 CR376846.1 coding downstream 549299 22521212 ~ 22521326 (+)
XLOC_000271 anxa5b coding downstream 682962 22654875 ~ 22665098 (+)
XLOC_000260 CR762427.1 non-coding upstream 682719 21254353 ~ 21254482 (+)
XLOC_000256 NA non-coding upstream 1789652 20146405 ~ 20147549 (+)
XLOC_000254 NA non-coding upstream 1908135 20026889 ~ 20029066 (+)
XLOC_000281 NA non-coding downstream 1517198 23489111 ~ 23506518 (+)
XLOC_000283 CT573447.1 non-coding downstream 1779186 23751099 ~ 23751213 (+)
XLOC_000285 dre-mir-218a-2 non-coding downstream 1894965 23866878 ~ 23866965 (+)

Expression


Co-expression Network