XLOC_000261 (med28)


Basic Information

Item Value
gene id XLOC_000261
gene name med28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21309386 ~ 21312596 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000431
AAAAGAGCTTgttgttagggaaaatggcgtcGTCCATGGGCGGAATGTTCCCCGGTCAGCAGCCTCCTGGATCTCATCCACCTCCGGGTCCGGGTGGTCCAGGTCAGCCAGGGCTCCTCACTGGTACTCCCGGTAACAGAGGGGCGAATAACACTTTAGTGGATGAGCTGGAAGCTTCTTTCGAGGCGTGTTTTGCATCTCTTGTCAGCCAAGACTATGTCAATGGAACTGACCAGGAAGAAATTCGAACTGgGGTTGATCAGTGTATACAGAAGTTTCTGGATGTGGCCAGACAGACTGAATGTTTCTTTCTTCAGAAGAGACTACAGCTCTCTGTACAGAAACCAGAACAGGTGGAAAAAGAGGATGCATCAGAACTAAAGAATGAACTCCAGAGGAAAGAGATGCTAATTCAGAAACACCTCGCCAAGATCCATCATTGGCAGCAGGTATTGGAAGACATCAACGTTCAGCACAAgaagcccacagaactgccacagGGTCCTCTGGCCTTCCTAGAGCAGGCTTCGGCCAACCTCCCCGCTCCAATGAAACCCAACTAGTGTATTTACAGAGATCCAAAACCTGCTTTAGATGTTGCTCAATGGGACACTTTTTCCTCTCCCTCCCAGCAAATGGTACAGGAAGCCCTTGGTATGTTACAGTGTGCTTCAAGAGCTACTAAATAACATTATTACAACTTTTCCCTTATGAAAGTGTTAGGTTTTGAAGAAATCaaagttattttatatttcttcatAAGAAAACTTAAGAATGCATTAGTTAGCTAAGAAAATGTTCTGTTAAGGAGTTATATTGATCTGAATTAGGTGGgataattttttgtttatattttacaattttattattatttttttgtacagttaaaaataaacattttgtcataca
>TCONS_00000432
ggaaaatggcgtcGTCCATGGGCGGAATGTTCCCCGGTCAGCAGCCTCCTGGATCTCATCCACCTCCGGGTCCGGGTGGTCCAGGTCAGCCAGGGCTCCTCACTGGTACTCCCGGTAACAGAGGGGCGAATAACACTTTAGTGGATGAGCTGGAAGCTTCTTTCGAGgGGTTGATCAGTGTATACAGAAGTTTCTGGATGTGGCCAGACAGACTGAATGTTTCTTTCTTCAGAAGAGACTACAGCTCTCTGTACAGAAACCAGAACAGGTGGAAAAAGAGGATGCATCAGAACTAAAGAATGAACTCCAGAGGAAA

Function

symbol description
med28 Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED28 (mediator complex subunit 28).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-041121-4 Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED28 (mediator complex subunit 28).

Ensembl:

ensembl_id ENSDARG00000037410

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000431 False 909 mRNA 0.42 4 21309386 21312596
TCONS_00000432 True 316 mRNA 0.51 3 21309404 21312088

Neighbor

gene id symbol gene type direction distance location
XLOC_000260 CR762427.1 coding upstream 54904 21254353 ~ 21254482 (+)
XLOC_000259 CT583646.2 coding upstream 370874 20936711 ~ 20938512 (+)
XLOC_000258 spock3 coding upstream 603090 20635190 ~ 20706296 (+)
XLOC_000257 si:ch211-142c4.1 coding upstream 702234 20593653 ~ 20607152 (+)
XLOC_000256 NA coding upstream 1161837 20146405 ~ 20147549 (+)
XLOC_000262 NA coding downstream 18829 21331425 ~ 21341653 (+)
XLOC_000263 NA coding downstream 188049 21500645 ~ 21501484 (+)
XLOC_000264 primpol coding downstream 250715 21563311 ~ 21573013 (+)
XLOC_000265 pax5 coding downstream 413225 21725821 ~ 21815554 (+)
XLOC_000266 kdm4c coding downstream 624605 21937201 ~ 21971913 (+)
XLOC_000254 NA non-coding upstream 1280320 20026889 ~ 20029066 (+)
XLOC_000253 NA non-coding upstream 1281460 20023932 ~ 20027926 (+)
XLOC_000250 NA non-coding upstream 1488191 19808441 ~ 19821195 (+)
XLOC_000269 NA non-coding downstream 1198138 22510734 ~ 22518754 (+)
XLOC_000270 CR376846.1 non-coding downstream 1208616 22521212 ~ 22521326 (+)
XLOC_000281 NA non-coding downstream 2176515 23489111 ~ 23506518 (+)

Expression


Co-expression Network