Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_000256

Basic Information

Item	Value
gene id	XLOC_000256
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	20146405 ~ 20147549 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003062
aaccttttggATGATCACACCGCTTCCATTGATTGGTGGGTTGAATTTTTGACCTTGCAGGTATTGTTCAATTGACCACTTTTTCCTTTGAGGGGTGAAGCTGGATCTTTGACCCAGAGGGGCGCTGGTTTGGTTTGGGCTACCTGACCTTCTGGAGCTCTTCTCTGAGCCAGGCTGGTAACGGTTGACCCAGTCTGTGCAGCAGCTTAGATAATTCAATGTTCTGATCCCTG

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00003062	True	233	lncRNA	0.48	2	20146405	20147549

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000255	prss12	coding	upstream	4561	20069535 ~ 20141844 (+)
XLOC_000254	NA	coding	upstream	117339	20026889 ~ 20029066 (+)
XLOC_000253	NA	coding	upstream	118479	20023932 ~ 20027926 (+)
XLOC_000252	apbb2b	coding	upstream	156821	19930520 ~ 19989584 (+)
XLOC_000251	UBA6	coding	upstream	260016	19849168 ~ 19886389 (+)
XLOC_000257	si:ch211-142c4.1	coding	downstream	446104	20593653 ~ 20607152 (+)
XLOC_000258	spock3	coding	downstream	487641	20635190 ~ 20706296 (+)
XLOC_000259	CT583646.2	coding	downstream	789162	20936711 ~ 20938512 (+)
XLOC_000260	CR762427.1	coding	downstream	1106804	21254353 ~ 21254482 (+)
XLOC_000261	med28	coding	downstream	1161837	21309386 ~ 21312596 (+)
XLOC_000250	NA	non-coding	upstream	325210	19808441 ~ 19821195 (+)
XLOC_000247	BX323590.2	non-coding	upstream	440573	19705699 ~ 19705832 (+)
XLOC_000239	NA	non-coding	upstream	881435	19253027 ~ 19264970 (+)
XLOC_000262	NA	non-coding	downstream	1183876	21331425 ~ 21341653 (+)
XLOC_000263	NA	non-coding	downstream	1353096	21500645 ~ 21501484 (+)
XLOC_000269	NA	non-coding	downstream	2363185	22510734 ~ 22518754 (+)
XLOC_000270	CR376846.1	non-coding	downstream	2373663	22521212 ~ 22521326 (+)

Expression

Co-expression Network