XLOC_000253


Basic Information

Item Value
gene id XLOC_000253
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20023932 ~ 20027926 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002828
TAAATTTAAAGAATGCCAGAGAACAGCTTGGGAATTGCTGGAGCTCAGCCAGCAGGTAAAGCTCTTTAAGTATTATATTTGTCTTTTGTAGATTGGAGTGTATCATGTGGAGAAACAAGGGGATCAAGCACCTCAGAAATGTCAGGAAACTCATGGTTGGGTCATACATTTCCtggctgaatggatggatgaatagatggtaCATAGATGTCTTTCCGCGAGGAAGGGGGTAGTGGTGGGCATATATTGTTAAATAGATGTCTTCTCTGTGACAGTTGTTTAATGTTcaggtaatggacacacaacaaGCAGGAGAACAAGACTCACAAAGGAAACGGTGGCGATAACTTGAAGAATGCTATAGAATAGCTTGGCCATTTGCGGAGTTTAGATATCAAGTAGAGCTTTGCTGGTGCTGTTTTTGCTTTGAATTGAGTAGTAGAAGACTCATAATGGGAACCGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002828 True 465 lncRNA 0.42 2 20023932 20027926

Neighbor

gene id symbol gene type direction distance location
XLOC_000252 apbb2b coding upstream 34348 19930520 ~ 19989584 (+)
XLOC_000251 UBA6 coding upstream 137543 19849168 ~ 19886389 (+)
XLOC_000250 NA coding upstream 202737 19808441 ~ 19821195 (+)
XLOC_000249 FNIP2 coding upstream 221330 19764995 ~ 19802602 (+)
XLOC_000248 march1 coding upstream 267573 19708508 ~ 19756359 (+)
XLOC_000255 prss12 coding downstream 41609 20069535 ~ 20141844 (+)
XLOC_000256 NA coding downstream 118479 20146405 ~ 20147549 (+)
XLOC_000257 si:ch211-142c4.1 coding downstream 565727 20593653 ~ 20607152 (+)
XLOC_000258 spock3 coding downstream 607264 20635190 ~ 20706296 (+)
XLOC_000259 CT583646.2 coding downstream 908785 20936711 ~ 20938512 (+)
XLOC_000247 BX323590.2 non-coding upstream 318100 19705699 ~ 19705832 (+)
XLOC_000239 NA non-coding upstream 758962 19253027 ~ 19264970 (+)
XLOC_000238 NA non-coding upstream 864647 19113197 ~ 19159285 (+)
XLOC_000233 NA non-coding upstream 1190489 18829172 ~ 18833443 (+)
XLOC_000260 CR762427.1 non-coding downstream 1226427 21254353 ~ 21254482 (+)
XLOC_000262 NA non-coding downstream 1303499 21331425 ~ 21341653 (+)
XLOC_000263 NA non-coding downstream 1472719 21500645 ~ 21501484 (+)
XLOC_000269 NA non-coding downstream 2482808 22510734 ~ 22518754 (+)

Expression


Co-expression Network