XLOC_000233


Basic Information

Item Value
gene id XLOC_000233
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18829172 ~ 18833443 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003056
ctgagaacaaataatagatttaaaagaccaaaaactGGCCGTTAGATATacacaaaatgtaataaatatcgTGTTTTAACTACAAGAGGGAGATTGAATCCAGCGGCAGATGCGAGATTGACTGGCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatatttttttaaacttgcgGGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcatGGTGAACCTGACTGAGTGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCAGTTTTAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTCAACATCAGCAACGGTGTGAAGATGGAAATCCAAAATTACAAGAATAATCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGTTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATAACACAATGCTAAGAATTTTCTCCGCCCAATATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTATCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATGACACTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACAAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTgataaaatgtttcttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCACTaacaaaaatgtactttattaGGTCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGGTGCactgatgttaaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTTATTATTTTGAATCTTtcaatgtgtgtttgtgataaaatgttacaggtataaaattacaattatcgTGCAGTTTACTCATggaaaaatattgctttttattcttttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtg
>TCONS_00003057
ATacacaaaatgtaataaatatcgTGTTTTAACTACAAGAGGGAGATTGAATCCAGCGGCAGATGCGAGATTGACTGGCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatatttttttaaacttgcgGGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGGTaagtttaatgttaaataactTATTGTAAATATCCGTTGGGTCATATTCAATTCATATTTGACGTTACTTTGCCTTGTGTATGTAGTTAAGATTAACGTTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACCagaaattaaaatatgatattttacaTAACCTGGCCATGAGACAGAGCTCGAGACACTGGCAAAACAGCGGTGAAACGTCCAGAGAAACAGTTCTAACACATTTAGTTTTGTTTGGATAATGTGGTTAAGTCTTTATTGCATACGTTATTTATAAACTCAGAATTTCCTTAGTGTTGGGAAGCTAACATTCATGCTAACGTCCATGTTTATTTCGGAAAGGAGTGAAGTGAATGCCTTCATGTCTGAAATAATATAACTTTAACGTTAGTTTATGCATATCTCGACCCACGTCCATTTATAGCAGTTGTATTTTGCAACGTTAacgttacatatttaaataacgtTATAAATGCATGTCCAAGAGAGTCATAATCATCTGTCGTGTCAGATCGACGTGCAGGTCATTTATCAAACCTTTAAGTTgctaatttaaagcttttttttttttgctgttaaccTCAAGTTCACAACgatcataatttttttctttcagaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTTGTATTTCATCTGTTtgttgataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatttatttagatatttatttatatattatgtatgcgtgtgtgtgtgtgtatactttttTCCCCAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCTTTTTTCTATGAAACTGTTAGGTGAAATGTTAaagttatattttaatttttatgattGTCATTATTTTGCACTTATATTTGATCCAATAGGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGAtcacacattttaaatcagttctcagtttaaatgaaaagtttaatGTCAGTAATAGCCAAAGTGTAGGATCAAAtgactattataaatgttatgactattgttaaaaaaaaaattatttttaagctTTGTGGTGAACATATGTGCATTTAAGCTTACAACTATTTGTACAATGATAACTAAAGGGAAATGGCAACAAAGAATATTAGATAATGTTTTAAGTTAAATTGAATCActaatttcctttttatttattatagtcatGGTGAACCTGACTGAGTGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTAACATAAAacttaagtaataataattttgctaGATCAAACCCTTATTTCTTGGATGTGATCATTAAGTGCCTTTTCAAGCTGCATTTAGCAAGTTCAAACTCATAGGCCTTATATACAAACCCTTTATATACAGAACATTCCataatgtttttctttaaaaaaatgtaattcataaaaatacatCAATATCTTTTATTCAGCATTTGCTAAACATTCCaatattttcttctttattttaaaaacaggtcctttatattattaaattatttaagagtacttcattatttgtctttattttattttagggtgtcacagtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggtttgagactcgg
>TCONS_00002827
GACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatatttttttaaacttgcgGGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcatGGTGAACCTGACTGAGTGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggtttgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttgtccccatgttggcgtgggttttctccgggtgctccggtttcctcgacaagtccaaagacatgcggtacagatgaattggtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCAGTTTTAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTCAACATCAGCAACGGTGTGAAGATGGAAATCCAAAATTACAAGAATAATCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGTTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATAACACAATGCTAAGAATTTTCTCCGCCCAATATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTATCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATGACACTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACAAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTgataaaatgtttcttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCACTaacaaaaatgtactttattaGGTCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGGTGCactgatgttaaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTTATTATTTTGAATCTTtcaatgtgtgtttgtgataaaatgttacaggtataaaattacaattatcgTGCAGTTTACTCATggaaaaatattgctttttattcttttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtg
>TCONS_00003058
cttaaaactacattttgtgaaacattagatgatatttttttaaacttgcgGGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcatGGTGAACCTGACTGAGTGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGggtgtcacagtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggtttgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttgtccccatgttggcgtgggttttctccgggtgctccggtttcctcgacaagtccaaagacatgcggtacagatgaattggtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCAGTTTTAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTCAACATCAGCAACGGTGTGAAGATGGAAATCCAAAATTACAAGAATAATCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGTTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATAACACAATGCTAAGAATTTTCTCCGCCCAATATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTATCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATGACACTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACAAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTgataaaatgtttcttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCACTaacaaaaatgtactttattaGGTCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGGTGCactgatgttaaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTTATTATTTTGAATCTTtcaatgtgtgtttgtgataaaatgttacaggtataaaattacaattatcgTGCAGTTTACTCATggaaaaatattgctttttattcttttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtg
>TCONS_00003059
CTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGggtgtcacagtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggtttgagactcgg

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0010646 regulation of cell communication biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0003002 regionalization biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0032502 developmental process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003056 False 2133 lncRNA 0.37 5 18829172 18833443
TCONS_00003057 False 2444 lncRNA 0.34 1 18829219 18831662
TCONS_00002827 False 2134 lncRNA 0.38 6 18829347 18833443
TCONS_00003058 False 2041 lncRNA 0.38 6 18829450 18833443
TCONS_00003059 True 317 lncRNA 0.50 4 18829614 18831662

Neighbor

gene id symbol gene type direction distance location
XLOC_000232 slc25a51a coding upstream 12366 18811679 ~ 18816806 (+)
XLOC_000231 si:dkey-192k22.2 coding upstream 265851 18550864 ~ 18563321 (+)
XLOC_000230 NA coding upstream 465301 18355746 ~ 18363871 (+)
XLOC_000229 CR392335.1 coding upstream 514027 18234470 ~ 18315145 (+)
XLOC_000228 NA coding upstream 660072 18165117 ~ 18169100 (+)
XLOC_000234 rnf38 coding downstream 29617 18863060 ~ 18933671 (+)
XLOC_000235 limch1a coding downstream 132307 18965750 ~ 19066327 (+)
XLOC_000236 exosc9 coding downstream 250058 19083501 ~ 19092155 (+)
XLOC_000237 ptpn9b coding downstream 261105 19094548 ~ 19112934 (+)
XLOC_000238 NA coding downstream 279754 19113197 ~ 19159285 (+)
XLOC_000227 NA non-coding upstream 858888 17966114 ~ 17970284 (+)
XLOC_000224 CR774194.1 non-coding upstream 967244 17858380 ~ 17861928 (+)
XLOC_000218 CR377220.1 non-coding upstream 2060363 16768683 ~ 16768809 (+)
XLOC_000239 NA non-coding downstream 419584 19253027 ~ 19264970 (+)
XLOC_000247 BX323590.2 non-coding downstream 872256 19705699 ~ 19705832 (+)
XLOC_000250 NA non-coding downstream 974998 19808441 ~ 19821195 (+)
XLOC_000253 NA non-coding downstream 1190489 20023932 ~ 20027926 (+)

Expression


Co-expression Network