Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_000236 |
| gene name | exosc9 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 19083501 ~ 19092155 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| exosc9 | Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC9 (exosome component 9). |
| id | name | namespace |
|---|---|---|
| GO:0034427 | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | biological_process |
| GO:0016075 | rRNA catabolic process | biological_process |
| GO:0071028 | nuclear mRNA surveillance | biological_process |
| GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | biological_process |
| GO:0071038 | nuclear polyadenylation-dependent tRNA catabolic process | biological_process |
| GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0034473 | U1 snRNA 3'-end processing | biological_process |
| GO:0034475 | U4 snRNA 3'-end processing | biological_process |
| GO:0034476 | U5 snRNA 3'-end processing | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0043928 | exonucleolytic catabolism of deadenylated mRNA | biological_process |
| GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0000176 | nuclear exosome (RNase complex) | cellular_component |
| GO:0000177 | cytoplasmic exosome (RNase complex) | cellular_component |
| GO:0000178 | exosome (RNase complex) | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0017091 | AU-rich element binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041010-180 | Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC9 (exosome component 9). |
| ensembl_id | ENSDARG00000006392 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00000389 | False | 1393 | mRNA | 0.44 | 12 | 19083501 | 19092155 |
| TCONS_00000390 | True | 805 | mRNA | 0.43 | 8 | 19083532 | 19090323 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_000235 | limch1a | coding | upstream | 17174 | 18965750 ~ 19066327 (+) |
| XLOC_000234 | rnf38 | coding | upstream | 149830 | 18863060 ~ 18933671 (+) |
| XLOC_000233 | NA | coding | upstream | 250058 | 18829172 ~ 18833443 (+) |
| XLOC_000232 | slc25a51a | coding | upstream | 266695 | 18811679 ~ 18816806 (+) |
| XLOC_000231 | si:dkey-192k22.2 | coding | upstream | 520180 | 18550864 ~ 18563321 (+) |
| XLOC_000237 | ptpn9b | coding | downstream | 2393 | 19094548 ~ 19112934 (+) |
| XLOC_000238 | NA | coding | downstream | 21042 | 19113197 ~ 19159285 (+) |
| XLOC_000239 | NA | coding | downstream | 160872 | 19253027 ~ 19264970 (+) |
| XLOC_000240 | si:dkeyp-118a3.2 | coding | downstream | 211086 | 19303241 ~ 19331532 (+) |
| XLOC_000241 | tyrp1b | coding | downstream | 240682 | 19332837 ~ 19346048 (+) |
| XLOC_000230 | NA | non-coding | upstream | 719630 | 18355746 ~ 18363871 (+) |
| XLOC_000228 | NA | non-coding | upstream | 914401 | 18165117 ~ 18169100 (+) |
| XLOC_000227 | NA | non-coding | upstream | 1113217 | 17966114 ~ 17970284 (+) |
| XLOC_000224 | CR774194.1 | non-coding | upstream | 1221573 | 17858380 ~ 17861928 (+) |
| XLOC_000247 | BX323590.2 | non-coding | downstream | 613544 | 19705699 ~ 19705832 (+) |
| XLOC_000250 | NA | non-coding | downstream | 716286 | 19808441 ~ 19821195 (+) |
| XLOC_000253 | NA | non-coding | downstream | 931777 | 20023932 ~ 20027926 (+) |
