XLOC_000230


Basic Information

Item Value
gene id XLOC_000230
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18355746 ~ 18363871 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003055
AAATAAATGACATCTTTAAAACTgtacaacacaaataaaacactGTTCCAAACACAAGCCAAAAACCAGAtttacactttaataaacaaaaatatacattaacCAAACAATACACTTGTGAGTCTGACATGTATAAGAAAACGACTGCATGGAAAGCAAttcatattacaataaaaaaggcGTGCATCCAATCATCATACATGATCAAACTACAACATATACATAACAATTTGCAACAATATGCATAACATTTAAGAGAGATTTCCTCCTGGAGTCACTCACTCTTTTCACTGATACAGTTTTCCAGTATATCATGTACAAAAGatggaaatacaaaaaaaaagtgtattaagtCAGAAATTTAATCCCAATCTGACATATAATGCAGcctaatttaaatacagtataaatataaatatgaacaaTATAAAGCTAAATGAATTGCTCAGTTTCTGAGCATGTGTTACATGTGTTTGATCTAAagccatgtttttgtttttttggcaatGTTAAATCAAAATGTTTCCAACATTCCAAGAAAtcaatatctgaaaaaaaaaaatcattcaaacaaatgaaaaaaaaattttatccTCATCTTTCCATAGCTCTACATAgctatttatacaacagttctttccggttctcaaatctgattggctgacatcCGTGTAACTTTCTGGAATAACAGCACTCGttcagcctcttaacccttctgtattactctgcccacatagagtgacagcagatcaataaactcactacagtttgacaaatattgcagctgttggacaacacaaTGGACTTTTGAGGcattttaggtgagaatgtagttgtttagattgcaacaatGCATTTCGTTTATAAGGATATtgcctattttaattatttataattttgaagATTCAGCATGTTGGCATCCACTAGCCTATCTTTGAGCAGAGCAGTTGGCGTTCCACCAAAGGATtgtgacagagactgcataatatgtccttagaggagaaaaactaaGCGTAaattcaaactacagctgattaaatcattataaaacaggtcaATTACATTCTTAGTCGATCTCTCTCTTATGGTagagtttgctttgctttggctttttctgggttaGTTACAATATtttgatatcctgattgcaacagagcaatagtgggaaatgtctctagactgatggcatttcatgccgttcagccttataatcttaaaacttGTTTTGCCATTATAGCCCTAAAGTGAAGTTTGTGAAGTAGCAAagttttctgctgttctgacgtcagctgcagatgtgaatcaATGACGAAAGAAAGCAGTTCCTCATAAAAAAggttttttgagactctccatgtttgattttttgAAAATAATCACGATTTTGAAgtggaactgttgtataaatgcaatatcacttgtagcagtgcaatatggcagTATATAGTCACTGGTGGGTCAGCATCAACACTTCCCATTCTCTTTAAAtaggtgatgtcaggcgttgccaaactgcattgcgGATCCATCGGTGCTGCTTCAGTCatgttgctcactgcagaagttgggaatttctcaacgTTAAGCACCAACGGctgtgtcagccaatcagactgCTTTATGCAAATAACCCAGCTCAGACAGTTGCCGGACTGATTTCACTGGCTGACGCTGCTACGATAGCAGCCCCAACTTCAGAAACGCCCTtggtcaagcgttgatgctgaagccctgtgtgaattcATGGTAAGACACTTTACCTTTGGGTCAACGCatacctcccaccagtgctgataaaAAGCAATATCGCACTACTACAAgaatgatattgctcatatatctcAATAAAACCGACTACCTTAAACCAATCCAGTTTTGAAAAACTTATATGTATGAGAACTTACAATATTTGAgtacacataataataaataaaagctatAATGCCACTTAATCAACAAATTAAACTCATCAAAACATACTCATTTGAGTTTGAGAATCTCAGTTTCAGCCGatacagatttttatttaaatagcattaatttatttattaaaactcatATTTTACAtggtcaaataataaaaaatgactgACAGCCAAAGGTAATTACACTTATATTGAAGGCATTTTCTCACAATGGAatgatattacattatttttacagCTTGTTTACATTTTTCAGGTTCATTTCAACATTCTATAATATATAAGTATGTACTCTGTACACATTCATACAGTATGAGATTGTTTTTTTCACCCATTGGTGTGGTACCGTCTTATTACACAGTATATATGGTATCCAATACAGATAACGTATAACAATAATTCTCAtttgtatcatttaaaaaaaacaactaaacatcAAAGGCTCTGTTTTGGTTGAACATGTATATGGTACAAGACAATGCTTGAATATAAGAtgacatgtaaataacaaaaaataaaaagacaatgaTGCTAATGAATTAGGCAGTCAAACATGACACTGATCGATATAATTTTTAGAGATGTAACCTTCCTTACATCTCTAAAATCTGATAGCTGCACAATGAATCCATATCACAGCATAACACTGTAATATAtagattattaaaaacaatattttgatgCTGAATTAAAAGATTACATGTTGGTTTTTATATCATAAATCGACTTAATGAAGAAAATCTGTTGTGAATATTTTCATAGCTCTAGGCTATATTGACTATTTTTAACTGTAGTTTGGGTCTCATTTCATTTAGTTTATCTTCATATGCTAATTCGCACTTCTCTTTCTTCATTTAAAACACTGAAGTAGGTCTTGGGATTTCGAAACTAGATCAAAATACGCAAACTGTTTTCTCTGACTTTGCACGCTTAACTTTGTACTCAGTATGGGGTTTGAGAGTGAGCCACTAacactcgcacacacatacacacacataacagaattatatttttacattttctccaAGAGaaccacaaaaaacacacacacacctgactgcAGAGAGGAGTACAAGTGGAGCGGAGATGAGGCATAACTGTGCAAAATGAACAAGTGTGCCAAAGCCATCCAAAAGCTGGTTTAAAATTCTCTTCTCATTCTGCATCgaacagcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacattttatctcACCATCAAAGACAATCCTGTGGGTGTACTGCAGAaataattttcttaaatcaaTATGTTTGTTTAACACCATGCTTTGAACAAGGCACGTTTGCTTTGGAAGCAAAAGAGAAAATACGAAAAGTGTTTTTCGAAACCCAGTGGCTTTGCAAACTAATTTAAAAGatgtatttattttgcatatttacaTGGATATACTTTACTTGGATATGAACTTGATATTTGCTTTATATTCCATAGTATAATTCACGCCAAAAGTGCAGAGATGAagaataaaaatcttaaaataattcATTTCGTTTAACcaaaagctttaaattaaatgaaatatttacaaaaaaagtctTTAACCCTTTGTAACCGCCTTATTGACCTTTTGTCCATAGGTTACCATTAAAACACCCCATAAACAAATACTGCTTTGAGTGGTGTCaggaacataatttaaaaaaaaataataataaatcctatGAGTGCAAACTGAAAGGTCAAATTCGATGGCATTCAGAACAGAAGAAGAAttgaaaagtataaaataaacCAATTATATTGCCATTCACTATTATCCATAAACTGTAAGCATCAAGCAAAtcaaaatcaatttaattaaAGACTGAAACTAGTAGTGAATTGAACTATTCCAAAAAATCCATTTCTCTAATTCAGAATGCATTCACATATCTGCATATATTACCTTTTTTGCTTGATgacattataaaaatgtttaaattaatcgTTTATACATCcccatttttctcaaaaaacatttctaaaggtgctgttgactttaaATTTCCACCAGGTATTGATAGCAGTCAAAGAAATCTGtataagcaaagaaaaaaaatctaattaatttacaaatgaagttctttgtaataaaatgaaatgacacagcaggtcctatcatacacccggcgcaatagggcgcaagatgtgtttgcccagatgtgttgctattttcagaccagcgcaaccctaatttctGTATTCTGCCACGTTGTATAAATATCAAATCAATTTGTGCCCCTTTGTGGACTCATTTGTGTtctggtctagaaaagaggtgcggtaaggcacattgttggtgcgttgctattttaagaaactaagatagactgcacaatagaccagctgaaagcaggtcttaAGTCCAGCGTAGAGCACATTACTGTAGTTGTGCgtctcgcttacacattgcttaaaacatgcaggatgtacagcaatatgcaaatatactttacatatgaaaatgaattaaaggaataaaatattacaaaatatgcatagttatatttgttttattaaaaacaagtttagatttgtccacctgtcaggtttttggaccatatggggaaTAAGAATAGgatatgtgtttggatataactcagttttttgaccacactttgttattgttgCTGATTTActggtttgctggaaattagaactgaatttagaaatagtttttaaacaaatatttgtgtttaccaaattaaattaattatgtaggctaatggatgcctTCAGTGGAGTGAATACAACaccgaaagagagaaagagaaaaaggttgattggaggaggctcattctttatcctcacattgcagatggtctgtttaactgttttctcactactGAAGCATTCCGTTTTTTcgcttacaaagtccgccatgtaaatagcaaatttcACAACTGACTCTTAACGGGAATGGGcattgcttttgcgccctgcactttagaATCTGTGCCTGGATTGTTAAAATAGACCCAAGGAAAACGTTTGGACACaagaagaaagggaggtgtagaaagtcAGTAAGAGCCCAGACAGTAGCTCAAATCTATCAGTAtctcttcagcaaccctctgcccttcatcgtTGTAAATGATTATTAGctgtttcagtccaacatctacattatcaggatgatgaagatgaaaccagagtggacatttcagcaagacaatgatcctaaacacagccaaggaaactttcAAATGCTTCCAGAGAAAGAAAATCTGTAGAATGGCAGAGCTAATCACATGAATAGAATCCAAAGGAAAATAGAacataaagatcagatttgatagacgagacccacagaaccatcaggatttttacactctgttgaaacAAAAATCACACCTGAGGAATTCATGTGACATCATTCTCCATATGAGCTGCATTTAAGTAGTTCAGGTCTTtgtccttgtgtcattccattgccattattattacacaacttatcttatatagatttttttgttttgttttatgtttgtattggtTGGGtatttaccaaaatctggttcaattccatgtcaacagcacctttagaaatattattcccaggaaaaaaaaatatgtgttcaATGCTTATTTTCCTTGCTGTACACCGTGTAAAATATGGTTTGTGTTTGTGATTCATTGACAGTAAATCTAAAGACTGTTAATCTGGTCTTGCTTTGTTCCCCAGCAGAGTTTACTTCCATTAAACGGACAGTGACCCAGAATCCAGCTGTTACAGTGGAGATGAATCACTGTGCAAAAATagaaatactataaataaaacattaagggGCGGAAAAAACACAATAACTAACCACTATATGactgtcctttttttttaaatctttcgcTTTACTCAGCAGGGAAACGGCTACAGAAACAGCTTCTCGGTTTGCATGGTTAACGTCCTCCACTGAGCGTTTCTAAATTCACAGAACAGAAAGAATGATTCAGAGTTGTGAATATGCATTAGACCTTGTTATGATCCTCTTTTCTCTGAGCTGGAAGCGAGTTGGGGAATAAGGGCATGGTATAATGAAGGATTGTGTTTCTCCCTTGTAGGTATAATTACCATATTCACATGAAATATTGCTGATGTGCTCTGAATGCGTTTGGGCaggtaaatgaaacataaattgAAGATGTGCGTGCTTACAATGGGCTGAAAATGTCAAATGTGAATTCCTCTCCGTTTCCATTTCTCTTCCTTTTACAATTTGGCTCCTTATCCACAGATTCTGCCCACGTTTTCTCTCTCTTATCCTCACTCCCTCATATGTGTTTGCCTGTCTAATATAAGCACATTTGCCAGACGTAATTTGATTTCGGTGGCAGAAGCTGCTCACTGATCAGTACCGTTTGATCAGATCTCAAAAATCTGTTCTGACCTTGCTgttctgtaataaataaataaatatatataaaaaaacacaccaCAAAGATGAAAATCTCATCAAGAGCTGCTGCCAACCTTCATTTCTCAACTAAAGCATTAATAATAAAGCTTGATTCTGAAAtagattaaaaacacacacacatgcgcgcgcacacacacacacacacgcaggttTTTTTGGCTCTCTCTCCAGCACTCTTTTCCCCTAGAGACACTTTACTGCACTCCAGCTATTCTTAGATGACAGACCCTTTCTACTGAGGAAATTTGGCTGTGCAGATTACAGTTATGCTTTTAATTGACTAAATATATATTCCGCTCTTTACATTCCATGATACAATATATGacatattttggttgtaaattGCTTGCTGAAGGTAAAAAGCTAACAAAATGGCTAAGCTATGCACAGTACTTAAGTAGTTGACAATTCAACCATTTAAAATGCAGACAGGTCTGTTTATATGTAACACCATTCAAACATTTGGggtcattaatattataataatgttttgttaaaatgtttagatatttCACTCCAAAAAAAGGAATGAACTGTTTCTGAAAGTTATTTTGCACTGATCGTAAACGTCAAAAATGATCATACTTGTCAACCATCCAATTTTTCCCGGGATCCCACTGtcatcccataaaggtatttctcccatatttttaatctttctatgaaaggtggcattaaacatttaaaagccgATCCTCCCAATACgtaacccataccgccgaaccatcAGGAGACGCCCCTTGCAGGATTCCATTCCTTTCCATTTTAGGCGCCATTGCCCcttctatgcaatcctcaaaacagtcaagccgcctttccactgcatacGACATTCAGACACGACTGTTGGAatatgcccccttgtggcagtcggcACAAGTCAGATGTGAATTTTCCACATTtagagatgatcggaactccatgGAGCTCCCTGACTACTCTCCACTGGAAATTAAGGACTTCTGGTCTGTCGCTTGTCATTtatcatgtgcagtggaaaggtggtTTATGTAGTGGAATACAAACATCTGTGCAGTGAAATGGatggacattaaattaaataaaccctGTCAGACTGCGACAGAATGGGATGAAGTCTGTCTCTTGATGTTAACAGCCAAGAAATAAACCACTTTCAATAGATAAA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0099643 signal release from synapse biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0030141 secretory granule cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003055 True 7553 lncRNA 0.35 2 18355746 18363871

Neighbor

gene id symbol gene type direction distance location
XLOC_000229 CR392335.1 coding upstream 40601 18234470 ~ 18315145 (+)
XLOC_000228 NA coding upstream 186646 18165117 ~ 18169100 (+)
XLOC_000227 NA coding upstream 385462 17966114 ~ 17970284 (+)
XLOC_000226 cyp4v8 coding upstream 443101 17900306 ~ 17912645 (+)
XLOC_000225 tlr3 coding upstream 457519 17892944 ~ 17898227 (+)
XLOC_000231 si:dkey-192k22.2 coding downstream 186993 18550864 ~ 18563321 (+)
XLOC_000232 slc25a51a coding downstream 447808 18811679 ~ 18816806 (+)
XLOC_000233 NA coding downstream 465301 18829172 ~ 18833443 (+)
XLOC_000234 rnf38 coding downstream 499189 18863060 ~ 18933671 (+)
XLOC_000235 limch1a coding downstream 601879 18965750 ~ 19066327 (+)
XLOC_000224 CR774194.1 non-coding upstream 493818 17858380 ~ 17861928 (+)
XLOC_000218 CR377220.1 non-coding upstream 1586937 16768683 ~ 16768809 (+)
XLOC_000217 NA non-coding upstream 1681620 16672089 ~ 16674126 (+)
XLOC_000238 NA non-coding downstream 749326 19113197 ~ 19159285 (+)
XLOC_000239 NA non-coding downstream 889156 19253027 ~ 19264970 (+)
XLOC_000247 BX323590.2 non-coding downstream 1341828 19705699 ~ 19705832 (+)
XLOC_000250 NA non-coding downstream 1444570 19808441 ~ 19821195 (+)

Expression


Co-expression Network