Fish Transcriptome and Expression Database

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model fish

XLOC_000218 (CR377220.1)

Basic Information

Item	Value
gene id	XLOC_000218
gene name	CR377220.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	16768683 ~ 16768809 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000367
TGGGTTATTGCGTGTGATGCCACCGGCTTCCGCCAACTCTCACATggccgcccactgaagctaagcaagactgcacccggtcagtacctggatgggagaccacatggaaaagctaggttaGACCTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108673

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00000367	True	127	rRNA	0.56	1	16768683	16768809

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000217	NA	coding	upstream	94557	16672089 ~ 16674126 (+)
XLOC_000216	pcm1	coding	upstream	114522	16621345 ~ 16654161 (+)
XLOC_000215	mtus1b	coding	upstream	148825	16548733 ~ 16619858 (+)
XLOC_000214	vps37a	coding	upstream	288470	16463079 ~ 16480213 (+)
XLOC_000213	CT573256.2	coding	upstream	309942	16458525 ~ 16458741 (+)
XLOC_000219	fat1a	coding	downstream	608113	17376922 ~ 17524922 (+)
XLOC_000220	casp3a	coding	downstream	758533	17527342 ~ 17536307 (+)
XLOC_000221	helt	coding	downstream	824583	17593392 ~ 17595045 (+)
XLOC_000222	slc25a4	coding	downstream	907936	17676745 ~ 17679089 (+)
XLOC_000223	ankrd37	coding	downstream	926617	17695426 ~ 17698773 (+)
XLOC_000211	CU633160.1	non-coding	upstream	606463	16162104 ~ 16162220 (+)
XLOC_000209	NA	non-coding	upstream	1332358	15422226 ~ 15436325 (+)
XLOC_000204	NA	non-coding	upstream	1695019	15073400 ~ 15073664 (+)
XLOC_000224	CR774194.1	non-coding	downstream	1089571	17858380 ~ 17861928 (+)
XLOC_000227	NA	non-coding	downstream	1197305	17966114 ~ 17970284 (+)
XLOC_000228	NA	non-coding	downstream	1396308	18165117 ~ 18169100 (+)
XLOC_000230	NA	non-coding	downstream	1586937	18355746 ~ 18363871 (+)
XLOC_000233	NA	non-coding	downstream	2060363	18829172 ~ 18833443 (+)

Expression

Co-expression Network