Fish Transcriptome and Expression Database

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model fish

XLOC_000211 (CU633160.1)

Basic Information

Item	Value
gene id	XLOC_000211
gene name	CU633160.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	16162104 ~ 16162220 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000353
CATAATAGCCATATCGCCCTGcggcccaagaccggttactcactgaacctaagcagggctgagcctggttagtacctgaaTGAGAGAGCagatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108223

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00000353	True	117	rRNA	0.51	1	16162104	16162220

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000209	NA	coding	upstream	725779	15422226 ~ 15436325 (+)
XLOC_000208	pi4k2b	coding	upstream	876649	15258641 ~ 15285455 (+)
XLOC_000207	hgsnat	coding	upstream	904789	15226268 ~ 15257315 (+)
XLOC_000206	itln1	coding	upstream	937766	15204633 ~ 15224338 (+)
XLOC_000205	pcdh7a	coding	upstream	958747	15137901 ~ 15203357 (+)
XLOC_000212	micu3a	coding	downstream	234650	16396870 ~ 16458257 (+)
XLOC_000213	CT573256.2	coding	downstream	296305	16458525 ~ 16458741 (+)
XLOC_000214	vps37a	coding	downstream	300859	16463079 ~ 16480213 (+)
XLOC_000215	mtus1b	coding	downstream	386513	16548733 ~ 16619858 (+)
XLOC_000216	pcm1	coding	downstream	459125	16621345 ~ 16654161 (+)
XLOC_000204	NA	non-coding	upstream	1088440	15073400 ~ 15073664 (+)
XLOC_000203	NA	non-coding	upstream	1140682	14851622 ~ 15021422 (+)
XLOC_000202	NA	non-coding	upstream	1391450	14769501 ~ 14770654 (+)
XLOC_000201	CU138548.6	non-coding	upstream	1394434	14767576 ~ 14767670 (+)
XLOC_000217	NA	non-coding	downstream	509869	16672089 ~ 16674126 (+)
XLOC_000218	CR377220.1	non-coding	downstream	606463	16768683 ~ 16768809 (+)
XLOC_000224	CR774194.1	non-coding	downstream	1696160	17858380 ~ 17861928 (+)
XLOC_000227	NA	non-coding	downstream	1803894	17966114 ~ 17970284 (+)

Expression

Co-expression Network