XLOC_000208 (pi4k2b)


Basic Information

Item Value
gene id XLOC_000208
gene name pi4k2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 15258641 ~ 15285455 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000349
ATAAATCGCTTCTGCGCCTTTAAGAGACCTGTCTGAATGTACTGGTAAATAGTGCGCATGCTTGAAAATAGAGGAAGTCGGTAATGGTGACGGATGATGTGGACGTGAAACGGTTGAGAGCATCAGCGTGTCTTCAaggaagaggaaaaaaaacatataaactcTTTAAGACGGACTCACGGATATGACGCGGGTATTTTGAGAGGTGTCTGAGTTTCTCTGGACACAGACCGAACACGCACTGTCCACGATGATGGCAGAATGCGACCCCACCGACGGCGAGCCGGGGAACGGCAGCGGAGATTCAACACCGGAGACGAACTTTCTCTCTTCGGAGGTGCCGGCTGTGTTATTTGAAAAAACCCGGTCGGCACCGTCGTTGGGACTCTCGTTGAGCCCCGGAGCAGCTGTCCGGATTTCGGACTCGACGGAAAGCGTGTTGACGGAGCTGGAAGCTGACGGGTCCGGCGAAGAGGCGCTCCTGTTACCGGGACCAGCCGGGAGCCTCTCACCTCGAGCTGGAAAAGAGAAAAGGACCCGGAGGAACATGCTCAGCTCATCATCCGATAATCTAGCATCTCCAGGTAATAGCAGTGGAGAATTCAACCATTTCCCAGAAGACCCAGAGTTCGGGGAGATTATCCAGAGGGCCGAACAGGCCATAGAAAACGGCGTCTTTCCTGAACGCATCTCACAAGGATCTAGTGGAAGTTACTTTGTCAAGGATCCTAAAGGGAAAATCATTGGGGTATTCAAACCAAAATCAGAGGAGCCTTATGGTCACTTAAACCCAAAATGGACCAAATACTTCCATAAGGTTTGCTGCCCGTGCTGTTTTGGCCGTGGCTGCCTCATTCCCAATCAGGGCTACCTCTCTGAGGCAGCTGCCTCCCTTGTGGACCAAAAACTGGGTTTGTGGATTGTACCCAAAACTAAGgttgTACATTTGGCTAGCGAGACTTTTCACTATAATGCAATTGACCGTGCCAAATCCCGTGGTAAGAAATATGCACTTGAGAAAGTCCCCAAAGTTGGACGACGGTTTCACAGAGTTGGCCTTCCTCCAAAGGTGGGctcatttcagctgtttgtggaGGGCTATCATGAAGCTGACTTCTGGCTGAGGAAGTTTGAAGCAGAGCCTCTTCCAGAGAACATGAGGAAACAGCTGCAGTCTCAGTTTGAGAGGCTGGTTGTGTTGGATTACGTTATTAGAAACACAGACAGAGGGAATGATAACTGGTTGATCAAGTATGAGAAGCCGGGCGATGGAGAGCTGACAGAGAAGGAATCTGAGTGGACTGATCCAAAAGACTCGGCCATAAAAATTGCAGCTATAGATAATGGTTTGGCCTTCCCCTTTAAACATCCTGATGAGTGGAGAGCATATCCGTTCCACTGGGCTTGGTTGCCTCAGGCCAAAGTGGCCTTTTCCCAGGAGACCCGAGACCTTGTGCTATCTCGCATTTCCGATATGAACTTTGTACAGGACCTCTGTGAGGACCTTTATGAGATGTTCAGGACGGATAAAGGATTCGACAAAACCATGTTTGAGAAACAGATGTCCGTTATGAGAGGACAGATCTTAAACCTGACACAGGCTTTGAAAGATGGGAAGAGCCCGATCCAGCTAGTGCAGATGCCTCGTGTGGTGGTGGAGCGGAGCCGCAGTGGGGGCCAGGGCCGCGTGGTTCAGCTAGGTAACGCTTTCACTCAGACATTTCACTGCAAGAGACCCTTCTTCACCTCCTGGTAAAAGAGCTGCACAGACAGAACCAGTTTACATGGACTACAGTCTTAAACCGGACTAAGGTGAGTTTCAGACACTGGATGGAGAACTTTCAGATGAAGATTTCCAGGGTGAATCGTAGCAAAGTGAGACACTTGCAGGACTGCACATGGAGAATCTGAGGCCTTTCGTTTTCCTGAGCCttttctcagtttctctggatgGATTGTCTAAAGGGAATCAATCAAATGTTGAAAATGCTGAAGTTTTTGTGTGCGACAGCCTTTCTCAACTGCCAATTGTTTTATAAGTATAACTATAGATCTTATTAATGAAGAATGATGCATTCAGATTAATTTAAACTTGAAAATAAACAATGCTTGAATGTAACTTGcaagtttacattttacactTCACATTTCAACACCAAGGAGCACTGGTGACCGTGGTATTTAATATGATGAATGTATTTGCTGGTTGTGTAACAGGACATGCGTTTGTTAAAGGCGGGAGCTTTTAAGCCCCTGTTGAAAGTGTAATTCCAAAaggtttttaattctttttctctTGTTCTCTATCACGCAATCCTGTGTATGCATCTTGGACTTTGTATTCCAGCCTAACGGTTGTTTAAGTAGAGCGGTAtatttaaagtgaataaaaaaataaagctttgaGATTTCAAAATAAACCTAGTTTTGTTGTTTTCTTATATTCTCTTGATGATGATATATACTGCTTTTAAGTGGAGCCCACATTTCACAAAGTCATGTAATCATTTCGTTAATaaatttaaagagcacctatttgaccccttttacaagatgtaagattaGCTTtcggtgtctccagaatgtgtctgtacagtttcagctttaaatacccatcagattatttattttagccttaagaatctgc

Function

symbol description
pi4k2b Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within pectoral fin development. Predicted to be located in cytoplasm and membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Is expressed in pectoral fin bud. Orthologous to human PI4K2B (phosphatidylinositol 4-kinase type 2 beta).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0007030 Golgi organization biological_process
GO:0007032 endosome organization biological_process
GO:0016310 phosphorylation biological_process
GO:0033339 pectoral fin development biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-990 Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within pectoral fin development. Predicted to be located in cytoplasm and membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Is expressed in pectoral fin bud. Orthologous to human PI4K2B (phosphatidylinositol 4-kinase type 2 beta).

Ensembl:

ensembl_id ENSDARG00000013881

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000349 True 2647 mRNA 0.45 10 15258641 15285455

Neighbor

gene id symbol gene type direction distance location
XLOC_000207 hgsnat coding upstream 1326 15226268 ~ 15257315 (+)
XLOC_000206 itln1 coding upstream 34303 15204633 ~ 15224338 (+)
XLOC_000205 pcdh7a coding upstream 55284 15137901 ~ 15203357 (+)
XLOC_000204 NA coding upstream 184977 15073400 ~ 15073664 (+)
XLOC_000203 NA coding upstream 237219 14851622 ~ 15021422 (+)
XLOC_000209 NA coding downstream 136771 15422226 ~ 15436325 (+)
XLOC_000210 tusc3 coding downstream 788432 16073887 ~ 16220235 (+)
XLOC_000211 CU633160.1 coding downstream 876649 16162104 ~ 16162220 (+)
XLOC_000212 micu3a coding downstream 1111415 16396870 ~ 16458257 (+)
XLOC_000213 CT573256.2 coding downstream 1173070 16458525 ~ 16458741 (+)
XLOC_000202 NA non-coding upstream 487987 14769501 ~ 14770654 (+)
XLOC_000201 CU138548.6 non-coding upstream 490971 14767576 ~ 14767670 (+)
XLOC_000200 CU138548.7 non-coding upstream 513902 14744645 ~ 14744739 (+)
XLOC_000217 NA non-coding downstream 1386634 16672089 ~ 16674126 (+)
XLOC_000218 CR377220.1 non-coding downstream 1483228 16768683 ~ 16768809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_04465330_04479739 PI4K2B coding CI01000300 null 4465098 ~ 4481238 (+)