RNA id: TCONS_00000349


Basic Information

Item Value
RNA id TCONS_00000349
length 2647
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_000208
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 15258641 ~ 15285455 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAATCGCTTCTGCGCCTTTAAGAGACCTGTCTGAATGTACTGGTAAATAGTGCGCATGCTTGAAAATAGAGGAAGTCGGTAATGGTGACGGATGATGTGGACGTGAAACGGTTGAGAGCATCAGCGTGTCTTCAaggaagaggaaaaaaaacatataaactcTTTAAGACGGACTCACGGATATGACGCGGGTATTTTGAGAGGTGTCTGAGTTTCTCTGGACACAGACCGAACACGCACTGTCCACGATGATGGCAGAATGCGACCCCACCGACGGCGAGCCGGGGAACGGCAGCGGAGATTCAACACCGGAGACGAACTTTCTCTCTTCGGAGGTGCCGGCTGTGTTATTTGAAAAAACCCGGTCGGCACCGTCGTTGGGACTCTCGTTGAGCCCCGGAGCAGCTGTCCGGATTTCGGACTCGACGGAAAGCGTGTTGACGGAGCTGGAAGCTGACGGGTCCGGCGAAGAGGCGCTCCTGTTACCGGGACCAGCCGGGAGCCTCTCACCTCGAGCTGGAAAAGAGAAAAGGACCCGGAGGAACATGCTCAGCTCATCATCCGATAATCTAGCATCTCCAGGTAATAGCAGTGGAGAATTCAACCATTTCCCAGAAGACCCAGAGTTCGGGGAGATTATCCAGAGGGCCGAACAGGCCATAGAAAACGGCGTCTTTCCTGAACGCATCTCACAAGGATCTAGTGGAAGTTACTTTGTCAAGGATCCTAAAGGGAAAATCATTGGGGTATTCAAACCAAAATCAGAGGAGCCTTATGGTCACTTAAACCCAAAATGGACCAAATACTTCCATAAGGTTTGCTGCCCGTGCTGTTTTGGCCGTGGCTGCCTCATTCCCAATCAGGGCTACCTCTCTGAGGCAGCTGCCTCCCTTGTGGACCAAAAACTGGGTTTGTGGATTGTACCCAAAACTAAGgttgTACATTTGGCTAGCGAGACTTTTCACTATAATGCAATTGACCGTGCCAAATCCCGTGGTAAGAAATATGCACTTGAGAAAGTCCCCAAAGTTGGACGACGGTTTCACAGAGTTGGCCTTCCTCCAAAGGTGGGctcatttcagctgtttgtggaGGGCTATCATGAAGCTGACTTCTGGCTGAGGAAGTTTGAAGCAGAGCCTCTTCCAGAGAACATGAGGAAACAGCTGCAGTCTCAGTTTGAGAGGCTGGTTGTGTTGGATTACGTTATTAGAAACACAGACAGAGGGAATGATAACTGGTTGATCAAGTATGAGAAGCCGGGCGATGGAGAGCTGACAGAGAAGGAATCTGAGTGGACTGATCCAAAAGACTCGGCCATAAAAATTGCAGCTATAGATAATGGTTTGGCCTTCCCCTTTAAACATCCTGATGAGTGGAGAGCATATCCGTTCCACTGGGCTTGGTTGCCTCAGGCCAAAGTGGCCTTTTCCCAGGAGACCCGAGACCTTGTGCTATCTCGCATTTCCGATATGAACTTTGTACAGGACCTCTGTGAGGACCTTTATGAGATGTTCAGGACGGATAAAGGATTCGACAAAACCATGTTTGAGAAACAGATGTCCGTTATGAGAGGACAGATCTTAAACCTGACACAGGCTTTGAAAGATGGGAAGAGCCCGATCCAGCTAGTGCAGATGCCTCGTGTGGTGGTGGAGCGGAGCCGCAGTGGGGGCCAGGGCCGCGTGGTTCAGCTAGGTAACGCTTTCACTCAGACATTTCACTGCAAGAGACCCTTCTTCACCTCCTGGTAAAAGAGCTGCACAGACAGAACCAGTTTACATGGACTACAGTCTTAAACCGGACTAAGGTGAGTTTCAGACACTGGATGGAGAACTTTCAGATGAAGATTTCCAGGGTGAATCGTAGCAAAGTGAGACACTTGCAGGACTGCACATGGAGAATCTGAGGCCTTTCGTTTTCCTGAGCCttttctcagtttctctggatgGATTGTCTAAAGGGAATCAATCAAATGTTGAAAATGCTGAAGTTTTTGTGTGCGACAGCCTTTCTCAACTGCCAATTGTTTTATAAGTATAACTATAGATCTTATTAATGAAGAATGATGCATTCAGATTAATTTAAACTTGAAAATAAACAATGCTTGAATGTAACTTGcaagtttacattttacactTCACATTTCAACACCAAGGAGCACTGGTGACCGTGGTATTTAATATGATGAATGTATTTGCTGGTTGTGTAACAGGACATGCGTTTGTTAAAGGCGGGAGCTTTTAAGCCCCTGTTGAAAGTGTAATTCCAAAaggtttttaattctttttctctTGTTCTCTATCACGCAATCCTGTGTATGCATCTTGGACTTTGTATTCCAGCCTAACGGTTGTTTAAGTAGAGCGGTAtatttaaagtgaataaaaaaataaagctttgaGATTTCAAAATAAACCTAGTTTTGTTGTTTTCTTATATTCTCTTGATGATGATATATACTGCTTTTAAGTGGAGCCCACATTTCACAAAGTCATGTAATCATTTCGTTAATaaatttaaagagcacctatttgaccccttttacaagatgtaagattaGCTTtcggtgtctccagaatgtgtctgtacagtttcagctttaaatacccatcagattatttattttagccttaagaatctgc

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0007030 Golgi organization biological_process
GO:0007032 endosome organization biological_process
GO:0016310 phosphorylation biological_process
GO:0033339 pectoral fin development biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-990 Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within pectoral fin development. Predicted to be located in cytoplasm and membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Is expressed in pectoral fin bud. Orthologous to human PI4K2B (phosphatidylinositol 4-kinase type 2 beta).

Ensembl:

ensembl_id ENSDART00000033018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002820 lncRNA upstream 184977 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 237219 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003047 lncRNA upstream 487987 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003048 lncRNA upstream 487987 14769607 ~ 14770654 (+) True XLOC_000202
TCONS_00002819 lncRNA upstream 648761 14607834 ~ 14609880 (+) True XLOC_000190
TCONS_00003050 lncRNA downstream 136771 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00003051 lncRNA downstream 1288511 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003052 lncRNA downstream 1386634 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 2623604 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 2680659 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00000348 mRNA upstream 1326 15226268 ~ 15257315 (+) True XLOC_000207
TCONS_00000345 mRNA upstream 34303 15204633 ~ 15224338 (+) False XLOC_000206
TCONS_00000346 mRNA upstream 35090 15216659 ~ 15223551 (+) False XLOC_000206
TCONS_00000347 mRNA upstream 35090 15216988 ~ 15223551 (+) True XLOC_000206
TCONS_00000344 mRNA upstream 55284 15137901 ~ 15203357 (+) True XLOC_000205
TCONS_00000350 mRNA downstream 788432 16073887 ~ 16220234 (+) False XLOC_000210
TCONS_00000351 mRNA downstream 842370 16127825 ~ 16220126 (+) False XLOC_000210
TCONS_00000352 mRNA downstream 859160 16144615 ~ 16220235 (+) True XLOC_000210
TCONS_00000354 mRNA downstream 1111415 16396870 ~ 16455921 (+) False XLOC_000212
TCONS_00000355 mRNA downstream 1111415 16396870 ~ 16458257 (+) False XLOC_000212
TCONS_00000343 other upstream 490971 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 513902 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 521077 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000340 other upstream 528251 14730296 ~ 14730390 (+) True XLOC_000198
TCONS_00000339 other upstream 535391 14723156 ~ 14723250 (+) True XLOC_000197
TCONS_00000353 other downstream 876649 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000357 other downstream 1173070 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000364 other downstream 1315243 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000367 other downstream 1483228 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 2228060 17513515 ~ 17522176 (+) True XLOC_000219

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_04465330_04479739.mRNA True 3237 mRNA 0.44 10 CI01000300 4465098 ~ 4481238 (+)