Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000352 |
| length | 727 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | XLOC_000210 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 16073887 ~ 16220235 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0015693 | magnesium ion transport | biological_process |
| GO:0018279 | protein N-linked glycosylation via asparagine | biological_process |
| GO:0008250 | oligosaccharyltransferase complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-050522-381 | Acts upstream of or within magnesium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TUSC3 (tumor suppressor candidate 3). |
| ensembl_id | ENSDART00000054707 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003050 | lncRNA | upstream | 708290 | 15422226 ~ 15436325 (+) | True | XLOC_000209 |
| TCONS_00002820 | lncRNA | upstream | 1070951 | 15073400 ~ 15073664 (+) | True | XLOC_000204 |
| TCONS_00003049 | lncRNA | upstream | 1123193 | 14851622 ~ 15021422 (+) | True | XLOC_000203 |
| TCONS_00003047 | lncRNA | upstream | 1373961 | 14769501 ~ 14770654 (+) | False | XLOC_000202 |
| TCONS_00003051 | lncRNA | downstream | 353731 | 16573966 ~ 16574929 (+) | False | XLOC_000215 |
| TCONS_00003052 | lncRNA | downstream | 451854 | 16672089 ~ 16674126 (+) | True | XLOC_000217 |
| TCONS_00000380 | lncRNA | downstream | 1688824 | 17909059 ~ 17911739 (+) | True | XLOC_000226 |
| TCONS_00002822 | lncRNA | downstream | 1745879 | 17966114 ~ 17968446 (+) | False | XLOC_000227 |
| TCONS_00002821 | lncRNA | downstream | 1745879 | 17966114 ~ 17968446 (+) | False | XLOC_000227 |
| TCONS_00000349 | mRNA | upstream | 859160 | 15258641 ~ 15285455 (+) | True | XLOC_000208 |
| TCONS_00000348 | mRNA | upstream | 887300 | 15226268 ~ 15257315 (+) | True | XLOC_000207 |
| TCONS_00000345 | mRNA | upstream | 920277 | 15204633 ~ 15224338 (+) | False | XLOC_000206 |
| TCONS_00000354 | mRNA | downstream | 176635 | 16396870 ~ 16455921 (+) | False | XLOC_000212 |
| TCONS_00000355 | mRNA | downstream | 176635 | 16396870 ~ 16458257 (+) | False | XLOC_000212 |
| TCONS_00000356 | mRNA | downstream | 176828 | 16397063 ~ 16456501 (+) | True | XLOC_000212 |
| TCONS_00000358 | mRNA | downstream | 242844 | 16463079 ~ 16480213 (+) | False | XLOC_000214 |
| TCONS_00000359 | mRNA | downstream | 246536 | 16466771 ~ 16470347 (+) | True | XLOC_000214 |
| TCONS_00000343 | other | upstream | 1376945 | 14767576 ~ 14767670 (+) | True | XLOC_000201 |
| TCONS_00000342 | other | upstream | 1399876 | 14744645 ~ 14744739 (+) | True | XLOC_000200 |
| TCONS_00000341 | other | upstream | 1407051 | 14737470 ~ 14737564 (+) | True | XLOC_000199 |
| TCONS_00000340 | other | upstream | 1414225 | 14730296 ~ 14730390 (+) | True | XLOC_000198 |
| TCONS_00000339 | other | upstream | 1421365 | 14723156 ~ 14723250 (+) | True | XLOC_000197 |
| TCONS_00000357 | other | downstream | 238290 | 16458525 ~ 16458741 (+) | True | XLOC_000213 |
| TCONS_00000364 | other | downstream | 380463 | 16600698 ~ 16614589 (+) | True | XLOC_000215 |
| TCONS_00000367 | other | downstream | 548448 | 16768683 ~ 16768809 (+) | True | XLOC_000218 |
| TCONS_00000369 | other | downstream | 1293280 | 17513515 ~ 17522176 (+) | True | XLOC_000219 |
| TCONS_00000377 | other | downstream | 1638145 | 17858380 ~ 17861928 (+) | True | XLOC_000224 |
