RNA id: TCONS_00000369


Basic Information

Item Value
RNA id TCONS_00000369
length 811
RNA type processed_transcript
GC content 0.54
exon number 4
gene id XLOC_000219
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17376922 ~ 17524922 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAAACTCAACAGGAACATCTACTCCGACATCCCACCGCAGGTCCCAGTACGACCCATTTCCTACACTCCCAGCATTCCAAGTGACTCCCGCAACAATCTAGACCGCAACTCGTTTGAGGGCTCAGCCATACCAGAGCACCCAGAATTCAGCACGTTTAACCCTGACTCGGTGCACGGGCATCGGAAGACGGTGGCGGTCTGTAGTGTAGCACCTAATTTACCTCCTCCTCCACCCTCCAACTCTGTTTCTGACAGTGACTCCATACAGAAGCCCAGCTGGGACTATGATTATGATGCTAAAGTGGTGGACTTGGACTCATGTTTAAGTAAAAAGCCGGTGGAGGACAGTGCATGTCACCCGTACAACACCAGAGGAAGCATGTCTGAGGTCCACTCTCTCAGCTCCTTCCAGTCTGAGTCCTGTGACGACAATGAGTCATTCTCGGCTCATGAACACAAGAACCCAAGAGGCTATCATTGGGACACATCTGACTGGATGCCGAGCGTTCAACTTCCTGGAATCCAGGAATTCCCTCAGTATGAGGTAGTGGAGGCTCCACCCACCCTTTACAGTGACCCCGCCCTGCTGGACACGGACTACTATCCTGGCGGATATGACATTGAAAGCGACTTCCCTCCTCCGCCTGACGACTTCCCATCCCATGATGACCTACCCCCTCCTCCACCTGTGCCAGAGTACGGTGATCGCTATGACACATTACAGCCTGCCTCACGCGGGTTAAACAGCACCCCCTCTAGTCCTGGAGGGTCTTCAATACGCCATCGGCCACCATTACCACAGCTCTACA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050425-1 Predicted to enable calcium ion binding activity. Acts upstream of or within closure of optic fissure and pronephros development. Predicted to be located in membrane. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pleuroperitoneal region; and tail bud. Orthologous to human FAT1 (FAT atypical cadherin 1).

Ensembl:

ensembl_id ENSDART00000131333

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003052 lncRNA upstream 839389 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00003051 lncRNA upstream 938586 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 2077190 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 2439851 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 2492093 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00000380 lncRNA downstream 386883 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 443938 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 443938 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003053 lncRNA downstream 444735 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00002823 lncRNA downstream 446980 17969156 ~ 17970275 (+) False XLOC_000227
TCONS_00000365 mRNA upstream 859354 16621345 ~ 16654161 (+) False XLOC_000216
TCONS_00000366 mRNA upstream 860054 16625678 ~ 16653461 (+) True XLOC_000216
TCONS_00000362 mRNA upstream 893657 16574312 ~ 16619858 (+) False XLOC_000215
TCONS_00000360 mRNA upstream 895774 16548733 ~ 16617741 (+) False XLOC_000215
TCONS_00000370 mRNA downstream 5166 17527342 ~ 17531542 (+) False XLOC_000220
TCONS_00000371 mRNA downstream 5202 17527378 ~ 17531527 (+) False XLOC_000220
TCONS_00000372 mRNA downstream 5202 17527378 ~ 17536307 (+) False XLOC_000220
TCONS_00000373 mRNA downstream 5755 17527931 ~ 17531812 (+) True XLOC_000220
TCONS_00000374 mRNA downstream 71216 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000367 other upstream 744706 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 898926 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1054774 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000353 other upstream 1351295 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000343 other upstream 2745845 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000377 other downstream 336204 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000400 other downstream 2012944 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 2183523 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 2286275 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 2292689 19814865 ~ 19819096 (+) True XLOC_000250

Expression Profile

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