RNA id: TCONS_00000365


Basic Information

Item Value
RNA id TCONS_00000365
length 6836
RNA type mRNA
GC content 0.47
exon number 39
gene id XLOC_000216
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16621345 ~ 16654161 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGTCACTTCGAGTGGAAAGCACACTACGCATTGACACTTTATCTTGGGTTTTTACAGAGCTTCATATGGGAATTATTTTTGTGCTACTGTAAGAGTTCGCCACAACGTTCAAGATTCTGATTGTTCATCATGGCAACGGGTGGCACTCCATTTGAAGATGGCACAGATGAGCAGGAGATGCAAAACTGGACCATCTCCAATGGAAGCTTGGATGATAGACTCAACAATATGGATTGGGGAGTGCAGCAGAAGAAGGCCAACCGCTCATCTGAGAAGAACAGAAAGAAGTTCTCTGCTATGTCAGAGAGCAGGCTAACTAATGACATTTCTCCAGAGTCTACCCCTGGAGCAGGGCGACGGAGAGCACGTACACCCCATTCTTTTCCTCATGTCAAATACAGCACTCAGATGTCTGTGCCTGACCAGGCTGAGCTTGACAGACTCCGGCAGGTCATAAACTTCACTGATTTGGATGAGAGAAGTATTGGCAGTGATTCTCAAGGCCGTGTAACTGCAGCCAACAATCAAAGACAGCTGTCTACTGAGGCCAAGAAACCTTTCAACTTTCTGCCAATTCACCTCAACACTAACAAAAGCAAAGAGCCCACTGCATCCACCTCTTCCACACCTGGGGGCAAGGAACACAAGAAACAGAGTCCTGGGAAAGAGCTGTTTGCCCCAGTTCCAGCAGTAGTTAAAGAACCTTTTAGTCTGGACGGTGCCCAGAGGTTGGGATTGGAGGATGCGAGGGGAGAGCTTTCCATTGACAGCAGTCAGattgTCAGTAAACTGGTGCAAATTCGTGAATACATTGGCAAGGCCACATCCATGAGAGACGACCTGGTGGAAAAGAACGATGTGCCTGCAAACGTGGAACGTCTGTCTCTCCTCATCACTCACTTGAAAGAGCAGGAGAAATCTTACCTGCGTTTTCTTCAAAAGATGCTGGGCCATGGGGTCTGTAGAGAGCAGAAAGAAGAGCTAGAAAACATGCGAAAGCAGCATGACTTGCTAAAAAAGATGCTGGAACAGCAGGAACAACTCCGAGCACTACAAGGCCGTCAAGCTGCACTACTGGCCATGCAGCAAAGTGCTGAACTAGCCATAGCAGTGATGGATGACACTGTTGTTACAGAGACTACTGGAAGTGTGTCTGGCAGGAGCATTACTTCTGAGCTCAATGATGAACTCAATGATCTTATCCAGCGCTTTCATAACCAGCTACATGATTCTCAGTCTCAGGTGGTTCCAGACAACCGACGGCAGGCAGAATGCCTCTCTCTTTCAAGAGAGGTGTGCCGCTCACGCACTACCCATAATTCCCGGGGTCAGTTACCTTCCTCTGCCCCACTAACTACTGCATCAACCTCAGACAGCGCAAAACTTTCTAAACTACAGGAGCTACAGGACAAAAAGCAGACCATGGACAAGATCCTCCAAGAACTCCATTCACTTAGAGACCAGACCCTCAACAACAGTTCCTGTCAGAGTGTCAGCCAGCGTAGTGCACGTGTAGGCATGTCAGAGCGTCCTTCAGTTTTGGGTAGAGAGGGAAATGGGCCACGTCCAGTAAGGCAGGGCTCATCCTCTTACACGCAGATTGATGATAACAGCCACTCTGCTGACAAACTCAGGAAGCTGAAGGAGGTGCACAAGCGATTGAATGAACTAAGAGAGTTGGTTCAGTATTATGAACAGACATCAGATATGGTGGTGGATACTGTAAATGAGAATGTGAAGGAGGAGGATGAGGAAACTGAGGACGGTTCACTTTTTGAGGCCATGTTTGATTCAGAGCAGGAGAACCACGAACCAGTTACCAACATCAGAAATCCAGCCCAACCACAGACTCCAAGTAACTGGATGGACATGAACAGTTTGACAAAGACTCGCAGTGCCTCCAATAATAGAGATGGCCGCCTGAACACAGAATGTGAAATCAATAATCGCTCAGCAGCCAACCTACGCAGTCTCAACATCCCTTCAGTCATAGAATGTCAGCACAACCGAGACAGGCCTTACGTTGGAGTTAaagatgaggatgatgaggaggTGCTGGAGGATGACGATGGAgctagaggaggaggaggaggtagaGACAGTGATGGTTCGGGATCTAGTCATAGGAGCAGTCTGGGCGGTGATGCAGAGTATGCTCAGAAAGTTCACCGTCTTCAAACAGCCAAACAGAAACTCAGACAACTTCAAGAACTGGTGGCTATGGTGCAGAGCGACGATACAGATGGTACTACAGCTAATGAGGATGAGGGTTTGAAGCAACAACCCAACAACACACGAGCAACAGCTCCCAAAGCTCAGAGAGACATTGCCCTCTGTGATAAGGCCAGagagAGATTGTATGAGGAGAAACTCAAGCAGCAGCAGCATGAACTAAAGCAGCTTCATGAAGAGAGACAGAGACTATTGGAGATTCAGGGGAAGATACAGGACATACAGTGGGCTTGCCCTGATCTTCAGTCATCTGTGAGCAGTAGTGCCAGTGGTCAAATGAGCAGGAAGATTCCTGCAGCAGCCTCTACTCCTGCTCCTGTTCCATTACAATCTTCTTCCTCAGCTAAAGCCAACACTAGTGGCCTCAAACCCACAACTGAACCTCCTCCAGTCACCGTCACTGACAATGAGCTGTGGACAGAGATGCGAAGGCACCAGATGTTGCGTGAGGAGTTGAGACAGAGACGGAAACAATTGGAGAGTCTGATGGCAGAGCAGCAAAGGAGAAGCACACTTCCTGACTCTCCATTCAGAAGCGACACACACGAGACCCAGTCCTACAGTCGTGATGAAAGAACGGTGGCCACATGGGGTGGTTCTACACAGTGTCCTcttggtgatgatgatgatgatgattactcATCTGAGGTCGGAGCtgaggaagatgatgatgatgaacgtGATGAGGGAGAGGAGTCCAGCTCCACCGATGAACGGCATGCTTGCTCTACACAAAAACAACGCAACTACAACAGGAATAACAGAGAGGGTCTGAAAGTTCTCAGCGAAGTTAACACGAGTCCTTCCCCTCGTGGATCAAGAGGTCGTTCTCGTCAGCAGCCGCAGTCTGAGAGAGGAAGTTCTAGCAAAGCGAAGAGGCAGGAGAACCTGCGATGGGCAGCTGATTTGTCTCTCGCTGAAGGTGCTGCACCAGCACACTGGCAGGAGCAGATCACACACCTCCAGAAACAACTCAACTTCAGCACTACCATGTGCCAAACTCTGCTTCAGGATCAGCAGACACTTTCATACATGCTGCAGGCTCTGCTCACTGGCCCCTGCGGTGTTGTGCCCAATAATGTGACCTCTCCTCAGGTCCCTCTCATCATGCACCAGCTAAACCAGTGTTACACACAGCTGGCTTGGCAGCAGAACAATGTCAATCGATTAAAGCAGACTCTGAATGATCTGTTGCGGCAGCAGCAGAGCCAGTCATCATCTGGACAACAGCAGCATCAAAGTGTTGCGCATGATCCTGCATCTCCTTCAATGTTTCTAAATTACCCATCTGTCAATGCACTCAATATTCCTGGACTTCCAAATTTCTCCCCTTTTCCAACTGTTGGAGATTTCCAGCAGAACCAGGCTAGCTCAGATCAACATCATGATCCAAATATATCCCTCAAAACGGAGTACATGAGCTTCCCCCCTCCACTACAGAGATCTCCACTCAATAATGCAGAGAAACgGTTCCAGTCTCACTCTGATAATCTGACTGATGCTAATAACTCCAGCTGGTTAAACTCCTCTCTGAATCGTTCTAGTCAGAGGCCCATTCTTACCTCAGACCATCCAAGTCAGGGAGAGCAGAACTCGCTTTCCTCATCTCCTGTCCCTCACCCTTCTACCTCCCGGGATCACTCTTATATACCTGACTCCCAGGAGTCTATGAGCAGCCTGCCAGACAGAGCAGACCCAACCACTGTCACCAAGACCTTCAGAGCAGGACGCAAGGCTGCGGCACAGGCCAGCCTGGCATCCAGAGACAAGACCCCCAATATGAAGAGCCGCCGGAAGAGAGGCAGGGGACAGAAGAACACTGCCTCTGTGGACAGTGACAGTGTTTCAAGTGACTCCCATTTTGAGAGAGAGCGCTCCAATCAGGTCAAATATAAAGAGCTCAACCAGGATCTGTTGGACAAGCTCACACAGGAAAAACTGGACAGCAAGACTAAGAACAGCAAGCCAAACGACCTCTCATCTGCATATGCTTGGAGAACACCTTTTCTCTCTAACAGAATTGCATGCACTGAAGTCCCAGATGTGAGCAGTGATTTCTCACTCTTTGAGGCCTTAAGAGAAACAATCTACTCAGAAGTGGCAACATTGATTTCTCAGAATGAGTCTCGCCCTCACTTTCTCATTGAGCTCTTCCATGAGCTTCAACTGCTCAATACAGACTATCTACGCCAGAGGGCGCTTTACTCATTGCAGGACATTGTAACGAGACACCTTACGGAGAAGAGTGTGGCAGATGAGCAGGCCTCCTCTTTAGGTCCAGCTGTATGGGCAACAGGCTCCCAATCAGAGCTCACGCCTAGTGAGAGCTTGGCTACAAGTGACAATGATGCATCTGACAAGATTGTAACTGTTAAATCCAACTCTGTATTGAAGAGGGTACCAGACAGAGACTCCATGGACAATGAGAGCCTTCTGTCTACGTCCTCCAACCTTGAACCATTTGCTAGTGATGACCTGGGTAACACAGTGATTCATTTAGATAAGGCATTGGCCAGGATGAGGGAGTATGAGCGCATGAAGCTGAGGGCTGAATGTAACACAGATAACCCTGAGCACAGCTCTGCCATTGCTGCTGCCACCGTTGCCTCACCTCAAGGTACTCAAGGTGCAGGACATTTGTCTACAGATGCACATTGTCCTCAGATTGACACCCAACAGCTGGACCGACAGATCAAAGCCATCATGACAGAGGTCATTCCCTTCCTAAAGGAGCATGTTGGGGAGGTGTGTTCACAGAAGCTGCTCAAGGCTGTGAGACACATGGTGCTCAACCTCACTCAGCAAAATGACGAAAGCAAAGAGTTTGTTCGCTTCTTCCACCGGCAGCTGGAAGGCATCCTGCAGGATTCCCTCAGCAAGTTTGTAGGTCGGAAGTTGCAGGACTGCGGTGAGGATCTGCTGGTGGAGATCTCTGAGATCCTGTTTAATGAGCTCGCCTTCTTCAGACTGATGCAAGATTTAGATCAGAACACCTCCAAAAACAAACTCAGGACCAAGAGGCGGTCCGACCACACATCTCCTAAACACTCGCCTCACACTGAGGAGATGAAAACACTAGAGAGAGAAAAGACGTTCTCACCATCCTATTTTGATGAAGACAGAGATCAGGATGAGACTGAGCGGCAAGAGATGCCTCATGAGAGAGAAGAGGAGAAGGAGAAAGAAGCACAGAGCAGTGAAGCATCTGAGGTGGAAGAGGAAGAAGGACTGCCACTTTCTATAAGCCTGTCTAAAGCAGAGACACAGGCTCTATGCAACTACGGCAGTGGAGAAGATGAAAATGAAGTGGAGGAGATGGAGGAGTTTGAGGCTGGACCTGTAGAGGTGCAAACATCATTACAAGCCAGCATGGACAACACTTGTGAACACAGAGAGAGCTCTGCGTTACAAAACGAAACCCCACAGGAAACCAAATCAGACCAAGACAGCTCAGAAAGTAGtcagtTAAATAGTGAACCGTCTGATCCCAAAGTCATTGTTCAGCCTCCAGAAGAGGGTGGAGAAGAGGAAAAATCTGCTTCGGGAGATGAAGGAGAGGAAAAGGAGGACAGCACTTCTGCTCCAGTCCAGGAAACTCCTCAGAGCTCCGATTCAGCCAGTCCTGATACAGACTCTCCAGTCATGATCAACACTGATGAAGCTGGATCTGGAAATACCAGTCAGAGATCGGATGAGGAAGATTTTGTGAAGGTGGAGGATCTTCCTATTCAGATGTCTGTTCTGTGTGAGGAAGAGCTGTGTAAGAGGATCTCAGAAGAACAGCAAAATAACAACTTGACAGCTGAAATTCTCAATGGAAATACAAGCGAGCTTACGGGATTGGTGGGAAATGCTCAAACACTCAAAGAGCCTGAAACCATTGGAGCCCAGAGTGCATGAGAATGATCTTTCAGTCTTACACTACAGTCCATCTTTCATGCAGCATTACTGTTTAATGAGCTTAATACCCTAAGAATCCTTGGAAACAACAGCTAAGCGAATCAACCTGTCAGCATGCGTGATCTAACAGTTCAAGAGACGGCAAAGAAGTCTCTACACCTGTAAGTAGTTTTATGGAGAATGTAGATGATGTCTTGAAGCGGGCTCTTGTCTGTCTTTTAAGCGGTTCTGTAGTCTGTAAGTGCTTTTTTCTGTGTTTCTCTTTGTTGAGCTTCTTCAACGGCTGAGGTTTAAGGGATGCAGAACATTTGTGTGTTCCTACGTTTGGCATGGTTAggcttttgtttttgcatttctcCTGTGATTTTTGCCAATGAAATACAAAGAGGACAATAGATCTTTTGTTTCTCTGGTTCAGGACAAAATTAAGCAGAAATGAAAATAAccctatttaaatatatttgacatGAACCAGACTGCACATTGAAAACCATTAGGGATTCAGCAGAATCACATGTTAGCACTGATGGATTGTCCTGTCCTTTCTTATTGCACTCTTTTAAATGTTCTCTTGCTTTTATTTGGATCTTTTTTTAAGGCATGTTGGCCAATGCTTGGGTTCTCACCCCATTTCACCTCGTGTAATTCTCCAATGTTTAGATTGAGATTTAAAACGAATAAAACATTGATTTTTACCATT

Function

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0034454 microtubule anchoring at centrosome biological_process
GO:0007098 centrosome cycle biological_process
GO:0060271 cilium assembly biological_process
GO:0035735 intraciliary transport involved in cilium assembly biological_process
GO:0034451 centriolar satellite cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-428 Predicted to be involved in intraciliary transport involved in cilium assembly; microtubule cytoskeleton organization; and protein localization to centrosome. Predicted to act upstream of or within cilium assembly. Located in centrosome. Orthologous to human PCM1 (pericentriolar material 1).

Ensembl:

ensembl_id ENSDART00000149026

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003051 lncRNA upstream 46416 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 1185020 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 1547681 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 1599923 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003048 lncRNA upstream 1850691 14769607 ~ 14770654 (+) True XLOC_000202
TCONS_00003052 lncRNA downstream 17928 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 1254898 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 1311953 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 1311953 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003053 lncRNA downstream 1312750 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00000362 mRNA upstream 1487 16574312 ~ 16619858 (+) False XLOC_000215
TCONS_00000360 mRNA upstream 3604 16548733 ~ 16617741 (+) False XLOC_000215
TCONS_00000363 mRNA upstream 4457 16600690 ~ 16616888 (+) False XLOC_000215
TCONS_00000361 mRNA upstream 9201 16573982 ~ 16612144 (+) False XLOC_000215
TCONS_00000358 mRNA upstream 141132 16463079 ~ 16480213 (+) False XLOC_000214
TCONS_00000368 mRNA downstream 722761 17376922 ~ 17524922 (+) False XLOC_000219
TCONS_00000370 mRNA downstream 873181 17527342 ~ 17531542 (+) False XLOC_000220
TCONS_00000371 mRNA downstream 873217 17527378 ~ 17531527 (+) False XLOC_000220
TCONS_00000372 mRNA downstream 873217 17527378 ~ 17536307 (+) False XLOC_000220
TCONS_00000373 mRNA downstream 873770 17527931 ~ 17531812 (+) True XLOC_000220
TCONS_00000364 other upstream 6756 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 162604 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000353 other upstream 459125 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000343 other upstream 1853675 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 1876606 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000367 other downstream 114522 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 859354 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000377 other downstream 1204219 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000400 other downstream 2880959 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 3051538 19705699 ~ 19705832 (+) True XLOC_000247

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_05306807_05337120.mRNA True 5864 mRNA 0.49 35 CI01000300 5306807 ~ 5337206 (+)