RNA id: TCONS_00002822


Basic Information

Item Value
RNA id TCONS_00002822
length 1212
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_000227
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17966114 ~ 17970284 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCATGACTCACACACCAAGATAAATATTGACATTATCACATCAACAGAACGTGCATGTGAAGGGAATACACAAcacgttctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacaaactttttaaaacctgatttacgcctattatcacagttttcttattttaaaaatatgtaatttttattttgtttatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatattttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggagtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGTTTCCATTAGTTCCTGTATCTGTAGACCTAGGTGACAGTGGGCTAGagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattcttt

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0030902 hindbrain development biological_process
GO:0030903 notochord development biological_process
GO:0035475 angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0035476 angioblast cell migration biological_process
GO:0060842 arterial endothelial cell differentiation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000380 lncRNA upstream 54375 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00003052 lncRNA upstream 1291988 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00003051 lncRNA upstream 1391185 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 2529789 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 2892450 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00002823 lncRNA downstream 710 17969156 ~ 17970275 (+) False XLOC_000227
TCONS_00002824 lncRNA downstream 1158 17969604 ~ 17970275 (+) True XLOC_000227
TCONS_00002826 lncRNA downstream 196671 18165117 ~ 18169100 (+) False XLOC_000228
TCONS_00002825 lncRNA downstream 196671 18165117 ~ 18169100 (+) False XLOC_000228
TCONS_00003054 lncRNA downstream 198475 18166921 ~ 18168581 (+) True XLOC_000228
TCONS_00000379 mRNA upstream 53469 17900306 ~ 17912645 (+) False XLOC_000226
TCONS_00000378 mRNA upstream 67887 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000376 mRNA upstream 267341 17695426 ~ 17698773 (+) True XLOC_000223
TCONS_00000375 mRNA upstream 287025 17676745 ~ 17679089 (+) True XLOC_000222
TCONS_00000374 mRNA upstream 371069 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000381 mRNA downstream 266024 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000382 mRNA downstream 582418 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000383 mRNA downstream 843233 18811679 ~ 18816806 (+) True XLOC_000232
TCONS_00000384 mRNA downstream 894614 18863060 ~ 18933671 (+) False XLOC_000234
TCONS_00000385 mRNA downstream 899060 18867506 ~ 18933072 (+) False XLOC_000234
TCONS_00000377 other upstream 104186 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 443938 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 1197305 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 1351525 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1507373 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 1566674 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 1737253 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 1840005 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 1846419 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 2007145 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

//