RNA id: TCONS_00000379


Basic Information

Item Value
RNA id TCONS_00000379
length 2486
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_000226
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17900306 ~ 17912645 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGATTAAAACACTGGAGAggtcacacagacacagacaactCGCTGACAATATGGTCGCGTTTGTCGGCGTGTATACTTATGGGTTTGTGGCTGCATCAGTTTGTGTTATTTGCTTTGCATATATCACCTACCAGCTGCTGAAAAGCTATCTGCACAAATGGAAAGAGCTGAAGCCCATCCCGGGCATTGGAAACACATTTCCGTTTATCGGGAACGCGCTGCAGTTTAAATCGAACGGAGATTTCTTTCTCCAGTTGGTTGGATACACAACTGAATTCCAGAATTCTCCACTACTCAAAATATGGATTGGACCCATTCCATTTCTCATCTTATTTCATGCTGAGACAGTTGAGACAGTCCTAAATAATCCTGTTCACATTGACAAGGCCTATGCATACCAATTTCTGCACCCCTGGCTAGGAACAGGACTACTCACAAGTACTGGGGATAAGTGGAGACGCAGACGCAAGATGCTGACTCCAACATTTCATTTCTCGATACTAACTGAGTTCCTGGAGGTGATGAATGAGCAAGCAGAGGTGCTCATAGAGAAACTAGAAAAGCAAGCCGGAAAGGGCCCATTTAACTGCTTTAGCCACATCACTCTCTGTGCCCTTGACATCATCTGTGAAACTGCCATGGGAAAGAGGATCTATGCACAGAGCAACTATGACTCAGAGTATGTGCGCACTGTGTACAGAATGAGTGACATCATCACCAGGCGGCAGAGGATGCCTTGGTACTGGCCTGACTTTGTGTATAACTATGTTGGTGAAGGCAGAGAACATAACCGTAGTCTGAAGATCCTCCATTCCTTCACAGAGAGTGTGATCAATGAGAGAGCTGAGTACTTATCTTACGTTGAGTCCGACAGCGAATCAGATCAGGGGATGAGGAAAAGGCGGGCTTTCCTAGATatgctgttgaaaacaaaagacgaGGATGGCAAAATGTTAACCCATAAAGATATCCAGGAAGAAGTGGATACATTTATGTTTGAGGGTCATGACACTACAGCGGCTGCTATGAACTGGGCCATACACTTGTTAGGCTCCCATCCTGAAGTCCAGAGAAAGGCACAACAAGAACTCTTTGAGGTTTTTGGCGAGTCTGAAAGGCCTGTTAATACAGAGGATCTGAAGAAGCTGCGTTATCTGGAGTGTGTGATAAAGGAGTCTCTGCGTCTCTTCCCTTCTGTTCCATTCTTTGCCCGAACCATCTGTGATGATACGCAAATCAATGGCTTTAAAGTTCCTAAAGGAACAAACATAGTCGTCATAACTTATGCCCTCCACCGTGATCCACGCTTCTTCCCTGATCCTGAAGAGTTCCGTCCTGAGAGATTCCTGCCAGAGAACTGCGTTGGTCGACATCCTTATGCCTACATTCCTTTCTCTGCTGGTCTTCGCAACTGCATTGGTCAGCGGTTTGCTATCATGGAGGAGAAGGTTATTCTGGCTTATATTCTGCGCTACTTTAACATCGTAGCATGTCAAAAGAGGGAAGAACTTCGCCCACTGGGTGAACTGGTATTGCGACCAGAGCAGGGCATATGGATCACACTGGAGCGCAGAAAGCTAACTATGTCATAAAAATATGTCCAAATTATGTAAAATCATAAAAGGTATAAATCATAAAAGTATGATTCGAACCATCCTGTGGAAATTATTGTTACGGGAGTTCACTGACACAATAACAATGACTTTAGTGGATAAACTGTTCTGTAAATGAAAACACTActtaattttaacttttaaaaatatacaattttgtaGTTTAACAAGGTCTGCAAAAATGCAACTGAACAATGAGTACAATTCTTATTAATTAACAGTTAAttgagtaaaagaagaaataattaGAAGAAATGAACGATTTCATTTATGTTAGAAGTTCTTCACTTTTTTATAGTACTTTGGCATACTGTCTTTAGACAAACATTCAACACACATAAATTACTCAAACATGTACCTTATGGTGGACTGTGACCAACTTTGGATTGTATGTGTACTTTAACACTTATACATCATCCCAAAGGTTACCAAATTGTAAATGAAAAGTCTATGAAGTCTGCAACAttataataaatgatgaataCAGTAATGGCttgtgttaaaaatatattaaatggctagaaacaagacaagtgTCAGGGAATTAATGTCATTTGGTGCTGTCATcacttaataaaaaaacatttatattctaAGTTACATCAAAGTGAATCTTTCTAGAATTGATGGCTATTAAAAATCAGTGTGTAAATTTTGTGTATTTTCTTTGTTGATTAAAAAATAGGGCTTTATTCCACATGCCAATAAAGATTAGAACCAATGAGCTTTGAGAGCAATTTTAATCTCCCGCCTTCATAGATCATTACACTGCTCTATGCTTATACAAACAAACTGATGTTTTTGCGTTTGTGTCAAGGTCAGGGTCGAGCTACTGTTTGTTTGACTGAATAAAAAGTTAACTTTTTCACACA

Function

GO:

id name namespace
GO:0010430 fatty acid omega-oxidation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-601 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Predicted to be involved in fatty acid omega-oxidation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in Bietti crystalline corneoretinal dystrophy. Orthologous to human CYP4V2 (cytochrome P450 family 4 subfamily V member 2).

Ensembl:

ensembl_id ENSDART00000089480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003052 lncRNA upstream 1226180 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00003051 lncRNA upstream 1325377 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 2463981 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 2826642 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 2878884 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00002822 lncRNA downstream 53469 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 53469 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003053 lncRNA downstream 54266 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00002823 lncRNA downstream 56511 17969156 ~ 17970275 (+) False XLOC_000227
TCONS_00002824 lncRNA downstream 56959 17969604 ~ 17970275 (+) True XLOC_000227
TCONS_00000378 mRNA upstream 2079 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000376 mRNA upstream 201533 17695426 ~ 17698773 (+) True XLOC_000223
TCONS_00000375 mRNA upstream 221217 17676745 ~ 17679089 (+) True XLOC_000222
TCONS_00000374 mRNA upstream 305261 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000372 mRNA upstream 363999 17527378 ~ 17536307 (+) False XLOC_000220
TCONS_00000381 mRNA downstream 321825 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000382 mRNA downstream 638219 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000383 mRNA downstream 899034 18811679 ~ 18816806 (+) True XLOC_000232
TCONS_00000384 mRNA downstream 950415 18863060 ~ 18933671 (+) False XLOC_000234
TCONS_00000385 mRNA downstream 954861 18867506 ~ 18933072 (+) False XLOC_000234
TCONS_00000377 other upstream 38378 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 378130 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 1131497 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 1285717 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1441565 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 1622475 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 1793054 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 1895806 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 1902220 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 2062946 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_06074165_06081192.mRNA True 4367 mRNA 0.38 10 CI01000300 6071998 ~ 6081934 (+)