RNA id: TCONS_00002823


Basic Information

Item Value
RNA id TCONS_00002823
length 944
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_000227
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17966114 ~ 17970284 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctggtcaggattcttcaggagaagcagtggattcttgtggcagagatgttcaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaagaatattaatatatttttatgttgttgtgttcttTTTTTAAGATTCGACATGTGCCCTTAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggatgttcttttactgtaatccagaagaggatgacctcaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaat

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0030902 hindbrain development biological_process
GO:0030903 notochord development biological_process
GO:0035475 angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0035476 angioblast cell migration biological_process
GO:0060842 arterial endothelial cell differentiation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002822 lncRNA upstream 710 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA upstream 710 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00000380 lncRNA upstream 57417 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00003052 lncRNA upstream 1295030 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00003051 lncRNA upstream 1394227 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00002826 lncRNA downstream 194842 18165117 ~ 18169100 (+) False XLOC_000228
TCONS_00002825 lncRNA downstream 194842 18165117 ~ 18169100 (+) False XLOC_000228
TCONS_00003054 lncRNA downstream 196646 18166921 ~ 18168581 (+) True XLOC_000228
TCONS_00003055 lncRNA downstream 385471 18355746 ~ 18363871 (+) True XLOC_000230
TCONS_00003056 lncRNA downstream 858897 18829172 ~ 18833443 (+) False XLOC_000233
TCONS_00000379 mRNA upstream 56511 17900306 ~ 17912645 (+) False XLOC_000226
TCONS_00000378 mRNA upstream 70929 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000376 mRNA upstream 270383 17695426 ~ 17698773 (+) True XLOC_000223
TCONS_00000375 mRNA upstream 290067 17676745 ~ 17679089 (+) True XLOC_000222
TCONS_00000374 mRNA upstream 374111 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000381 mRNA downstream 264195 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000382 mRNA downstream 580589 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000383 mRNA downstream 841404 18811679 ~ 18816806 (+) True XLOC_000232
TCONS_00000384 mRNA downstream 892785 18863060 ~ 18933671 (+) False XLOC_000234
TCONS_00000385 mRNA downstream 897231 18867506 ~ 18933072 (+) False XLOC_000234
TCONS_00000377 other upstream 107228 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 446980 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 1200347 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 1354567 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1510415 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 1564845 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 1735424 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 1838176 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 1844590 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 2005316 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

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