RNA id: TCONS_00000414


Basic Information

Item Value
RNA id TCONS_00000414
length 2502
RNA type processed_transcript
GC content 0.51
exon number 2
gene id XLOC_000250
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19808441 ~ 19821195 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attcggatgtacaaaagaatatgcgtgagattcatttaaaaagctgtaaatgtgcgtatgcagaaaaaaattcagatgtatgaaacactgcgtacgccgaatctcacgcatattcttttgttttagtatgatttccacgcaagtcttcgtacatgaggccccaggtcagtGTCTGATTTAATACTACATATGAAAATGGCACAAATCTGaactgaaaagatcagattcgatgcggtttgggctgttcacatGGTCATTACTTGAGTCATATGAGGGGGGAAAAATCAGATTCGGGCCACATTtggctgcagtgtgaacgtagcctaatTGTAGTCATACGCCTTTAATGACATCTATTCTATTTGTTCTCAGGTCATGGATTTCCCGGGGCACTTTGAGCAGATTTTCCAGCAGCTGAACTTCCAGCGGCTGCATGGACAGCTGTGTGACTGCGTGATCATGGTTGGCAGCCGTCATTTCAAGGCCCACCGCGCTGTGCTGTCTGCCTGCAGTACGCATTTCCGAGCCCTGTTTACTGCGGCTGAGGGAGATGCCAGCACAAGAATGATCCACCTGGACTCTGAGGTGGTGACCGCTGAAGCGTTTGCTGCTCTCATGGATATGATGTACACATCCACACTGATGCTGGGAGAGAGTAACGTGATGGATGTATTGTTGGCTGCTTCTCATCTGCATCTAAATGCTGTGGTGAAAGCCTGTAAGCACTACCTGACAACGCGCACTTTACCCATGTCTCCACCTGGAGATCGTGGCAGTCAACATCACACTGAGCAACAGCAAGCGGCGGCGGCTGCCAACTCTCATCTTCAGCGATCATTTCTGCTCCAGCAGCTCGGCTTGAGCTTGGTTAGTTCTGCCTTGAGTGGGGCTGAAGATGGGGGAACGGGGACGCAGCGGAGAACGGGTGCGGTGTGCGGAAATGGATTGGGGGATCAGCATGGTTCTCACCCAACACGCCGTTTCTTAAAACGCAAGCAGCCCTTACCCCTGATTACTTCAGAAAGGGGAAGGCCACGGCTTTCCTCACAGGTGGAGGGCATCGTGGGGGAGTCAGGGGGCCGAGATGGAGGAGAGGAGCTTCTGTCTCCAGATTCACACAGTAAAATGGTGGACGAAGTGGTCACTGGCGTTATTCCCATGGATGATGGAGGTTTACTGGAGCAGGATGAATATCGAAGGGGACTGACCCATGAGGACATGCAGCTCCCGAGCCAGTCAGATGGAGGAAGGGGAACAGGAGCAGAAAAAGCATTGCTGCTGCCGCGAAAAGAGGAGTACCCAGATGCAGGTCGTCACCATGATGAGGGGATGAAGATAAAGAATGGAGATGAGGAGGAAGAGCAACAGCACATGCAGGTCGTGGTGAAGAGCGAGCCACTGAGTTCACCCGAGGCGGTGGATGAGACTAGCGATGTTACCTCACAGGCAGAAGGCAGTGATCAGGTGGAGCCAGTTGGAGAAAAACTGGAGCTCAGTCCAGAGTGCAGTGAGCGCAGCTACTCTGATCCGCAGCCCAGCTCTGAGCTGCTGATCAAAGGAAACAAGGGATTAGGAGCTGCAGAAGACAGAAGAGGAGAGACGCTATCCTGCAGTGAAGCTCTTGAGTCCTCCTCTGGATTACACATCACCAGTTTCCTCAGCACTAAGGCCTTTATTGGCAGAGGGGTGTCTTCAAACCATGCCAGTAGTGTTGACAGTGTTCCCAACACCACAACTGGAGAATTTCAAGCAGACCACGATTCCGCTCGCTTCTTCCTCCCGAATGATTCCATCAACGCTGCATCTTCCTCTCTGCACCTCCTTTCAGGAGAGACCCAGGTCTGCTCTGACATGCAGCCAGAGTCCCTTCTCATGCGCCCGCTGCATGATGGAATAGCAACTTCCTCCTCATTAGGGACGTCCCGTGGTGGATCGGTAGATCAGCTTGCTCTTGAGTTTCAGCGCAACATTTTGGGATTACAAACATTCCCTCATTCGTCCAGAGGTGGAGGTGGTGGTGGAGGGTGCCAATCATACCGGCGCATCGCTCCTAAAGCTCATCCAGGAGGGGCTTCAATGCTAATGGACGGCCCTCAGCAACATGACGCTgcttcctcgtcctcttcctccACAATGCTACTCAATGGAGTCAACTTTGAGAATTCTGTCCCCATAGTTCAAAACAGTGGCAACTCCAACTTGAACCCTCTTCCCCAGTTGACCAGAGCCTCAGCAGATGTCCTGAGTAAGTGTAAAAAGGCGCTTTCTGAGCACAACGTGTTAGTGGTGGAAGGTGCCAGAAAGTACGCCTGCAAGATCTGCTGTAAGACCTTCCTCACTCTGACGGACTGCAAGAAACACATCCGGGTTCACACCGGCGAGCGTCCGTATGCCTGCCTGAAGTGTGGCAAGCGCTTTAGTCAGTCCAGTCACCTGTACAAGCACTCCAAAACAACCTGCTTACGGTGGCAGAACAGTGATATGTCTAATGCCATGCTCTAA

Function

GO:

id name namespace
GO:0009057 macromolecule catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0016579 protein deubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0101005 ubiquitinyl hydrolase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000180175

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000398 lncRNA upstream 348645 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000397 lncRNA upstream 352402 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000395 lncRNA upstream 377188 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00003061 lncRNA upstream 549895 19253027 ~ 19264970 (+) True XLOC_000239
TCONS_00003060 lncRNA upstream 655580 19113197 ~ 19159285 (+) True XLOC_000238
TCONS_00002828 lncRNA downstream 204836 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00002829 lncRNA downstream 207793 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00003062 lncRNA downstream 327309 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00003063 lncRNA downstream 1117629 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003064 lncRNA downstream 1512329 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00000411 mRNA upstream 12263 19764995 ~ 19802602 (+) True XLOC_000249
TCONS_00000410 mRNA upstream 58506 19708508 ~ 19756359 (+) True XLOC_000248
TCONS_00000409 mRNA upstream 58628 19708508 ~ 19756237 (+) False XLOC_000248
TCONS_00000407 mRNA upstream 149091 19649545 ~ 19665774 (+) True XLOC_000246
TCONS_00000406 mRNA upstream 182779 19616799 ~ 19632086 (+) True XLOC_000245
TCONS_00000415 mRNA downstream 30072 19849168 ~ 19886389 (+) False XLOC_000251
TCONS_00000416 mRNA downstream 36394 19855490 ~ 19886132 (+) True XLOC_000251
TCONS_00000417 mRNA downstream 111424 19930520 ~ 19989584 (+) False XLOC_000252
TCONS_00000418 mRNA downstream 113969 19933065 ~ 19989062 (+) False XLOC_000252
TCONS_00000419 mRNA downstream 124707 19943803 ~ 19950795 (+) False XLOC_000252
TCONS_00000408 other upstream 109033 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000400 other upstream 275226 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000377 other upstream 1952937 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 2292689 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 3046056 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000420 other downstream 156495 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000430 other downstream 1435257 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000435 other downstream 1745410 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000444 other downstream 2702116 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 3455826 23274922 ~ 23279702 (+) True XLOC_000276

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_07154407_07156385.mRNA True 1196 mRNA 0.54 2 CI01000300 7154407 ~ 7156429 (+)