RNA id: TCONS_00000415


Basic Information

Item Value
RNA id TCONS_00000415
length 3427
RNA type mRNA
GC content 0.46
exon number 33
gene id XLOC_000251
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19849168 ~ 19886389 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGAAGTGTGCAGCTCCCGATCCTCGCGCACATTGACAGGATCTTAAAGAGGAACATCTGGACACCCCCTCTCCCCTTCCCACTATGGCCGACTCCATGGATATAGATGACTCTCTGTACAGtcgGCAGCGGTATGTGCTGGGGGACAGTGCTATGCACCAGATGGCCCAGTCCACAGTGTTTGTCAGTGGAATGGGAGCACTTGGAGTGGAAATAGCAAAAAACATTGTTCTGGCAGGAGTGAAGGCAGTCACTCTTCATGACAGTAAGCGATGTGAAGTTTGGGATCTGGGCACCAACTTCTTCATCAGAGAGGAGGATGTGAATAATCAGAAGAAAAGgGTGGAAGCTGTGCATTCACGAGTGGCAGAGTTAAACCCATATGTCCAGGTCACCATGTCCACTGATGTCCTGGATGAAAGCACAGACCTCAGCTTCCTGAAGAGATACCAGtgtgtAGTGTTAACAGAAACAAAGCTGACCCTACAGAAACGAATCAACCATTTCTGCCACACTCAACAGCCTCCTATTAAGTTCATTGGCTGTGATGTGTTTGGGATCTGCTCGCGGGTGTTCTGTGATTTCGGGGAGACGTTTGAGGTGTCTGACCCTACAGGAGAAGAATCAAAAGAAATTTTTATCCAAAACATCAGTCAGGGCAGTCCTGGTGTTGTGACATGTATGGACAGCCGAACACACGGCCTTCAGACGGGACAGAGTGTTTGTTTGAAAGAGATCAACGGCATGACTGAACTCAATGGTACCATGCACCAGATTACAGTTCTGTCTCCCTATACCTTTGCGATTGGAGACACTTCATCATTCCAGCCATATACTCACGGAGGATTCTTCCGCTTGGTCAAGATCCCCAAAACCTTCAGCTTTGAGAAGATGGAGCAACAGTTATCTGATCCTCGGCTCCTTACTCCAGACTTCAGCAAACCAGAGGTCCCTCTTCAGCTCCATGCGATCATGCTAGCTTTGGATGCTTTCCTGGAACAGCATGCTAGACTGCCCAATATTGGTTGTTTGCAGGATTCAGAGCTGCTTCTGAAATATACAGAGGAGATCAGCAAAACACTTAAAAACAAGGTATGCATAAATCCGGATCTGGTGAGGTGTGTGTCGCGCTGTGCCAGAGGGTGTTTGTTTCCTCTAGCGGCGACAGTGGGGGGCATCGCTAGTCAGGAGGTCTTAAAGGCTCTCACTGGGAAGTTTTCCCCTCTTCAACAATGGTTTTATCTGGATGCATTAGAGGTTGTACAGCCCCTCCAGTCTCTTCCTGCTGAGGAATTTTCCCCAAGGGGTGACCGGTACGATGCATTGCGGGCATGTATCGGCCAGTCGCTGTGTTTGAAACTGCACAAGTTTCAAGTCTTCATGGTGGGCTGTGGTGCTATTGGCTGTGAGATGCTGAAGAACTTGGCACTTCTGGGTGTGGGATTGAGTAGATTTTTGGGAGAGATTTGCATCACAGATCCAGATTTGATTGAGAAATCCAACCTCAACCGACAGTTTCTCTTCAGACCACACCATatacagAAACCCAAAAgcactacagcagcagaagctTCATTAGAAATAAACCCAGAGCTGCAAATACACGCTCATCTTCATAAAGTGTGTCCTGCTACAGAGGACATTTATAGTGATGATTTCTTCTCCCGCCTCAATGTGGTGGTCACCGCACTGGACAACGTGGAGGCACGGAGATACGTGGACAGCCGGAGTGTATCCAATCAGAAAGCTCTGTTAGACTCAGGCACAATGGGTACGAAAGGGCACACTGAGATCATCGTTCCAAACCTCACCGAGTCCTACAACAGCCATAGAGACCCACCAGAAGAGGAGATTCCATTTTGCACTCTAAAGTCTTTTCCTGCTGTTACTGAACACACCATACAGTGGGCCAGAGACAAGTTCGAGAGTGCTTTCGCCCACAAGCCCTCAATGTACAATATGTTCTGGCAGAGTCACTCATCAGCTCAGAGTGTTCTACAGAGGATGATGGGTGGAGAGAGCATGGAAGGATCATTTCAGGTCATTAAGTTGCTGAGTCGGAGACCTACTCAATGGGATCACTGTATAACTCTCGCTCGACTCAAATTCGACAAGTACTTCAAAAGAAAGGCATTACAACTACTGCACTCATTTCCATTGGACACACGGCTAAAAGATGGCAGTCTGTTCTGGCAGTCTCCAAAACGACCACCTTCTCCCATAGACTTTGACCTCAGTGACCCGCTGCATTTTGGTTTTGTTGTCAGCGCAGCTCGCCTTTTTGCTGGAATTTATAATATTCCATACTCAGAAGAGCAACTTTCCTACGAGGATGTCTCCAGAGTTTTAGCTGAAGTGGATGTTCCTGAATACAAACCAGCTGAAAAGCATATAGAGACTGACGAGACTGTTAAAAAGCCAGATCAGTTGAAAATAACAGTGAGCAGTGAGGAGGAAAGAGAAGCCATTTCACAGCTACAAGAGGCCATCAACTCCAACTTAGTAACACCTGAGAGACTATGTATGAGTCCGCTGTTCTTCGAAAAGGACGATGACACAAATGGACACATGGATTTTGTAGCATCAGCGTCAGCCCTGCGAGCTCGTATGTACGCCATTGAGGCCGCTGACCGACTACAAACCAAACGAATAGCTGGCAAAATCATCCCTGCGATTGCTACATCTACAGCTGCTGTCGCTGGACTGGTGTCGATGGAGTTGATTAAAATTGCTGGCGGTTATGGATTTGAGTTGTTTAAAAACTGCTTCTTCAACCTGGCCATTCCAGTTGTGGTTCTTACAGAAACAGCTCAGGTCAAGAGAACCCAAATCAGAGATGATATTTCATTTTCTATCTGGGATCGTTGGACCATCTTCGGTCGTGAGGACTTCACCTTATCTGATTTTATTAGTGCCGTAAGGgAGAAATACGGGATTGAGCCCACCATGGTTGTTCATGGAGTGAAGATGCTGTATGTGCCAGTTATGCCAGGCCACAACAAAAGACTAAAACTAACAATGCATAAACTGATCAAACCTTCATCAGGAAGGAAATATGTCGACCTGACCGTATCGTTTGCCCCTGAGGTGGATGGTGATGAAGATCTTCCCGGTCCTCCAGTGCGATATTACTTCagtggagaaaatgaaagcagcGAGacagcctgacacacacacacatacaaaactcaacaaacactcttctctcttgcCCTGTGGACCACAAGTGAAGTAGCACTTGATCAGACTCAGTGTACATAGTGAATTTTTGTTTTCTActggtttaatattttattgcacAGCATTGCCTGTGCAGATGCCTTAAGATAATTCTATTGTACTTCAATGTGGCAACAATGACTAATATTAACGCTCTTAAGAGTAAAACTAAAAGAAAGTGTTTACACGACTTTCCCCAGGGCTTa

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000111454

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000412 lncRNA upstream 27973 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00000398 lncRNA upstream 382948 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000397 lncRNA upstream 386705 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000395 lncRNA upstream 411491 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00003061 lncRNA upstream 584198 19253027 ~ 19264970 (+) True XLOC_000239
TCONS_00002828 lncRNA downstream 137543 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00002829 lncRNA downstream 140500 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00003062 lncRNA downstream 260016 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00003063 lncRNA downstream 1050336 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003064 lncRNA downstream 1445036 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00000411 mRNA upstream 46566 19764995 ~ 19802602 (+) True XLOC_000249
TCONS_00000410 mRNA upstream 92809 19708508 ~ 19756359 (+) True XLOC_000248
TCONS_00000409 mRNA upstream 92931 19708508 ~ 19756237 (+) False XLOC_000248
TCONS_00000407 mRNA upstream 183394 19649545 ~ 19665774 (+) True XLOC_000246
TCONS_00000404 mRNA upstream 217015 19602389 ~ 19632153 (+) False XLOC_000245
TCONS_00000417 mRNA downstream 44131 19930520 ~ 19989584 (+) False XLOC_000252
TCONS_00000418 mRNA downstream 46676 19933065 ~ 19989062 (+) False XLOC_000252
TCONS_00000419 mRNA downstream 57414 19943803 ~ 19950795 (+) False XLOC_000252
TCONS_00000421 mRNA downstream 183146 20069535 ~ 20138647 (+) False XLOC_000255
TCONS_00000422 mRNA downstream 198000 20084389 ~ 20141844 (+) True XLOC_000255
TCONS_00000414 other upstream 30072 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 33719 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000408 other upstream 143336 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000400 other upstream 309529 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000377 other upstream 1987240 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000420 other downstream 89202 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000430 other downstream 1367964 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000435 other downstream 1678117 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000444 other downstream 2634823 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 3388533 23274922 ~ 23279702 (+) True XLOC_000276

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_07170775_07183983.mRNA True 4144 mRNA 0.45 30 CI01000300 7170775 ~ 7185081 (+)