RNA id: TCONS_00003061


Basic Information

Item Value
RNA id TCONS_00003061
length 525
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_000239
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19253027 ~ 19264970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGTATGAGGAATACACTATCTTCATATATCACTTTAATGCACTCGCAGATTCATAAGCAGCACCTCTAATAAAGAGATGgagggagaaaaaaagaaagagatagTTATTGAGCGGCTGAGAGGAAGAGGGGAAAAATGATCTAATGCAGCTAATGCAGCTCCAGTTTAGCACATTAAGAAAGACAGACGCGCACACACATAGAAAAAAAGGAGTGAATCAAGGAGTGAAAGAAAATattcagagagaaagagagagggagcaAAAGGAAGAGATTGAGAGATGGAAACAAACCAATAGAGAGGAAGAGGGAGAGACAGAAGAGTGAGAGATGAGatACTGAGGCAGCCGTTCATCCACCATCCTCCCCACCACCATCACAAGGTTGGCCCAGTCCATTGGGGTAGGCTACAAGCTACCATAGGATCTACAAGCTTTCATTTAAAGCTACAGACGGGGCATCCACTAAAGAAATgctttgttttgttaaattataCTATGCTAAATAATACTTTTGTCAAATAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003060 lncRNA upstream 93742 19113197 ~ 19159285 (+) True XLOC_000238
TCONS_00000388 lncRNA upstream 253481 18965815 ~ 18999546 (+) True XLOC_000235
TCONS_00002827 lncRNA upstream 419584 18829347 ~ 18833443 (+) False XLOC_000233
TCONS_00003058 lncRNA upstream 419584 18829450 ~ 18833443 (+) False XLOC_000233
TCONS_00003057 lncRNA upstream 421365 18829219 ~ 18831662 (+) False XLOC_000233
TCONS_00000395 lncRNA downstream 168037 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00000397 lncRNA downstream 194010 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000398 lncRNA downstream 196955 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000412 lncRNA downstream 543471 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00002828 lncRNA downstream 758962 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00000391 mRNA upstream 140093 19094548 ~ 19112934 (+) True XLOC_000237
TCONS_00000389 mRNA upstream 160872 19083501 ~ 19092155 (+) False XLOC_000236
TCONS_00000390 mRNA upstream 162704 19083532 ~ 19090323 (+) True XLOC_000236
TCONS_00000387 mRNA upstream 186700 18965750 ~ 19066327 (+) False XLOC_000235
TCONS_00000386 mRNA upstream 319955 18920213 ~ 18933072 (+) True XLOC_000234
TCONS_00000392 mRNA downstream 38271 19303241 ~ 19331532 (+) True XLOC_000240
TCONS_00000393 mRNA downstream 67867 19332837 ~ 19346048 (+) True XLOC_000241
TCONS_00000394 mRNA downstream 168034 19433004 ~ 19466453 (+) False XLOC_000242
TCONS_00000396 mRNA downstream 169228 19434198 ~ 19466452 (+) False XLOC_000242
TCONS_00000399 mRNA downstream 250258 19515228 ~ 19517791 (+) True XLOC_000243
TCONS_00000377 other upstream 1391099 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 1730851 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 2484218 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 2638438 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 2794286 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 270150 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 440729 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 543481 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 549895 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 710621 19975591 ~ 19980987 (+) True XLOC_000252