XLOC_000252 (apbb2b)


Basic Information

Item Value
gene id XLOC_000252
gene name apbb2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19930520 ~ 19989584 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000417
atcgtcattctcgccatcatatggatttactttcatggAGCATATGTCTTGAGTGCTTCCATGGTGATAACCCGCTGCTGATTCGCTGAAACCTTGATGATGCGCTGACTCTACATCATGGCCCATGAGGCTCTGTGGAAATACCCACAATCCTCAGCTCCCTGATATACACTGACAGTGTCTCCGGCTCAAAGAGAAAACCTGTACAAGCCATGATGTCAGTCTGCATGCCCTCACCACACAACTCATCCCCTTCCGTGGATGCAGCCAATCGCAACGGGCCCTCTGCAACTCCGCCCACTTCCCTCAGTTTGCGTTCCTCACACAATCAGTTGCTCAGTGGTGATGTTATCAAACAGGGCCAGGCCACGCCCCCAAAGTGCCGGAAGAAGTATGCTCTAACAAGTATTCAGAGTGCAATGGGTCTCGGCGAAGGTGTGATGCCACCATCATCTTCATCAGCAACTACTGCCAACCCTAAACTGGCCAAAAACGGTGCAAATCAGTTACGCAAAGCTGCCGAGAGACAGGACCACAACAAAAACACTactgaagaagaggaagaagatgaAGATGGAAACACAGCAGCCCAATCAGAGCTCAGCATCGACGATGAGTTGAGGAATATTGAGGAATTAAGTCTGGACAGCGAGTCTAATGTTGACGACGTTCACAGTGACTTTGACGCCAACAACGAGCTTGTCGATGAAGAAGTAAACGAGTTAATTGAAGATGACACTAATGAGGAGGATCACGTTGAGAATTGTGATGACCTGCTCATTCTATCTGAGAAAAGCGAAATCGTTTCAGACAAGAAGTCCCCTGATCACCTTAAGACCAAGAGTTATCTGGAGTCATGCCTGGATGGTCTGTCATACCAGCTGCCTGATTCGCAAGACGACGACATCACTAAGCCTTTGCTGGAGAACAAGAAGGATCCCTGTCCCGCATCTCCAAGAAAACCACAGAGCCCCGAGGACACACCCCTGCTGTCTGTCGGCTCTTCATCTTCCTCTTCCTCGCCAGAGACAAAAAAAGACAGACCACGCACAGGAGCCAAGACAGACAGGGCACTAAACCGCATCCAGAACCTTCCACACAGCGATGAGGAGTCTAGCTGGACCACACTGTCACAGGACAGCGCTTCGCTGGGCTCACCTGAAGAGAACGATATCTGGGGCGAGCAGTCATTTCAGACAGACCCTGATTTGCCTCCAGGATGGAAGATGATGACAGACATGGCTGGTATTTATTACTGGCACATTCCAACGGGCACCACACAGTGGGAGCGGCCAGCCCCATGCCATCCAGTGCCAACTGGACCCAGCCATGCCAGCCGCAAACACTCACTGGGTTCCCTGTCGCCTTCACCCACCCCAGATCATGAGTCGATGTCTCATGCCGATGTGTTTTTTGGAGCGTCGAGTCGTTCGGGCAGCACCACTTCTGACAGTTCGTCTGAGCCCGCTCCCATCCCGTCTTCTTCATGTCTGGACCCGACCCCCATCCTGTCCTCAAACTCATCCTCATCCTCTGACGCAAATGTTCCTTCCTGTGGATTCGTCAACAGCTGCTactttAAACAGCCATGGAGTGATTTTGCAGTGGGAAAGATTGATAGTGAGATCTGGAAGGATCTACAGGCGGCCACAGTAAACCCTGACCCCAGTCTGAAAGAGTTTGAAGGCGCAACTCTCCGCTACGCCTCCCTCAAGCTACGAAACCCTGCTCCTGTGGAAGAGGAAGATTCCAGCAGCATTAACAGTGACCCTGAGGCCAAGtGTTTTGCCGTGCGCTCTCTCGGTTGGGTAGAGATGGCTGAAGAGGATTTGGCTCCGGGTAAAAGCAGTGTCGCTGTAAACAACTGCATCCGTCAACTGTCCTACTGCAAGAATGACATACGAGACACTGTGGGCATCTGGGGAGAGGACATGTACCTCATTCTGGAAAATAACATGCTGAATCTGGTTGACCCAATGGATCGGAGCGTCCTCCACTCTCAGCCAATCGCAAGCATCCGTGTGTGGGGCGTTGGCCGTGACAATGGAAGGGATTTTGCATACGTGGCACGAGATAAGGACACCCGGAtattaaaatgtcatgttttccGCTGTGACACCCCTGCCAAAGCCATCGCTACCAGTCTGCACGAAATCTGCTCTAGGATCATGGCAGAGCGCAAGAATGCCAAAGCTATGGCTGGAGGATCCCTACAGGACAGAACACATGCTGGCATCGACGTCCCATTACAAGCAGAGTTTCCCACACCAAAGACTGAACTGGTGCAGAAGTTCCAGGTGTTATATGTTGGCATGATGCCAGTTGCCAGACCTATAGGCATGGACATTCTCAATGGCGCAATAGACACTTTGGTAACATCATCAATCCGAGATGACTGGATCCCTGTGCTGTTGAATGTAGCTGATGCGACAGTCACAGTCATCAAAGAAAAGGAGGAAGACGAGGTCCTAGTGGAGTGTCGTGTGCGTTTCCTGTCATTCATGGGAGTAGGAAAGGATGTGCATTCTTTTGCGTTCATCATGGACTCTGGGAACCAACACTTTGAGTGCCATGTGTTTTGGTGTGATCCCAATGCTGGCAATGTGTCAGAGGCTGTCCAGGCAGCGTGCATGTTGAGGTATCAGAAGTGTCTGGTGGCGCGTCCTCCATCTCAGAAAGCCTGCTCACAGGCGCCCCCTGCTGATTCAGTCACCCGCCGCGTCTCCACCAGCGTCAAACGTGGAGTTCTTTCTCTCATCGACACGCTCAAACAGAAGAGACCCGTCACTGAGCTGCCTCAGTGATCTGACACACATACTCACCGTCACGCTCTGCATGCTTATAACTATCCGAATGTCCTGTACATACCTGTCCGGTCACATGGTGGAGATGAAGAGGATCACAAGGATGAAAAATCAGAAAATAAAGCTGATGCCAAGAAAATACACCCTTTACTCACACACTCACAAGTACATCAGATCTACTATAcaagcctctctctctctcttccgaTGTCAATCATGCATATATTTGCATGGGAAGCCACGCCTCTCCAGCATGACAGAAATCAACAGGCTCTGCCCACCTAGAAGAACCGCCTCATCTAGAATAAGCCTGATCAAAGAGAGAACTTGATTCGAAGAATGTTTGTGCATATAAGAACAAATATGGCTGCTTGTTCATTTCATCGAGTTCATCATCGCTGCATGATCATATGTAAGTGTGGATGTATAGAAGAGCTGAAGGATTCTACTGTCCTAAAGTGTCCTAAAAAGcaaggttttattttttgtttccctCTTTATTATCCTGCCGAACACAAAAGC
>TCONS_00000418
atggtcagcagcagtactcaggtaggctCCATGATGTCAGTCTGCATGCCCTCACCACACAACTCATCCCCTTCCGTGGATGCAGCCAATCGCAACGGGCCCTCTGCAACTCCGCCCACTTCCCTCAGTTTGCGTTCCTCACACAATCAGTTGCTCAGTGGTGATGTTATCAAACAGGGCCAGGCCACGCCCCCAAAGTGCCGGAAGAAGTATGCTCTAACAAGTATTCAGAGTGCAATGGGTCTCGGCGAAGGTGTGATGCCACCATCATCTTCATCAGCAACTACTGCCAACCCTAAACTGGCCAAAAACGGTGCAAATCAGTTACGCAAAGCTGCCGAGAGACAGGACCACAACAAAAACACTactgaagaagaggaagaagatgaAGATGGAAACACATTGAGGAATATTGAGGAATTAAGTCTGGACAGCGACGAAATCGTTTCAGACAAGAAGTCCCCTGATCACCTTAAGACCAAGAGTTATCTGGAAAAACCACAGAGCCCCGAGGACACACCCCTGCTGTCTGTCGGCTCTTCATCTTCCTCTTCCTCGCCAGAGACAAAAAAAGACAGACCACGCACAGGAGCCAAGACAGACAGGGCACTAAACCGCATCCAGAACCTTCCACACAGCGATGAGGAGTCTAGCTGGACCACACTGTCACAGGACAGCGCTTCGCTGGGCTCACCTGAAGAGAACGATATCTGGGGCGAGCAGTCATTTCAGACAGACCCTGATTTGCCTCCAGGATGGAAGATGATGACAGACATGGCTGGTATTTATTACTGGCACATTCCAACGGGCACCACACAGTGGGAGCGGCCAGCCCCATGCCATCCAGTCCGCAAACACTCACTGGGTTCCCTGTCCCCACTTTCTCCATGGTGGGTTTTAAACCCTGCTTTATCTCTGCTCAAGGATCTACAGGCGGCCACAGTAAACCCTGACCCCAGTCTGAAAGAGTTTGAAGGCGCAACTCTCCGCTACGCCTCCCTCAAGCTACGAAACCCTGCTCCTGTGGAAGAGGAAGATTCCAGCAGCATTAACAGTGACCCTGAGGCCAAGtGTTTTGCCGTGCGCTCTCTCGGTTGGGTAGAGATGGCTGAAGAGGATTTGGCTCCGGGTAAAAGCAGTGTCGCTGTAAACAACTGCATCCGTCAACTGTCCTACTGCAAGAATGACATACGAGACACTGTGGGCATCTGGGGAGAGGGGAAGGACATGTACCTCATTCTGGAAAATAACATGCTGAATCTGGTTGACCCAATGGATCGGAGCGTCCTCCACTCTCAGCCAATCGCAAGCATCCGTGTGTGGGGCGTTGGCCGTGACAATGGAAGGGATTTTGCATACGTGGCACGAGATAAGGACACCCGGAtattaaaatgtcatgttttccGCTGTGACACCCCTGCCAAAGCCATCGCTACCAGTCTGCACGAAATCTGCTCTAGGATCATGGCAGAGCGCAAGAATGCCAAAGCTATGGCTGGAGGATCCCTACAGGACAGAACACATGCTGGCATCGACGTCCCATTACAAGCAGAGTTTCCCACACCAAAGACTGAACTGGTGCAGAAGTTCCAGGTGTTATATGTTGGCATGATGCCAGTTGCCAGACCTATAGGCATGGACATTCTCAATGGCGCAATAGACACTTTGGTAACATCATCAATCCGAGATGACTGGATCCCTGTGCTGTTGAATGTAGCTGATGCGACAGTCACAGTCATCAAAGAAAAGGAAGACGAGGTCCTAGTGGAGTGTCGTGTGCGTTTCCTGTCATTCATGGGAGTAGGAAAGGATGTGCATTCTTTTGCGTTCATCATGGACTCTGGGAACCAACACTTTGAGTGCCATGTGTTTTGGTGTGATCCCAATGCTGGCAATGTGTCAGAGGCTGTCCAGGCAGCGTGCATGTTGAGGTATCAGAAGTGTCTGGTGGCGCGTCCTCCATCTCAGAAAGCCTGCTCACAGGCGCCCCCTGCTGATTCAGTCACCCGCCGCGTCTCCACCAGCGTCAAACGTGGAGTTCTTTCTCTCATCGACACGCTCAAACAGAAGAGACCCGTCACTGAGCTGCCTCAGTGA
>TCONS_00000419
CCGGCTCTACCTCTGCTTTCCTCTCTCTTCTCATGTCATCCTCTCCTCTTGCGGCTGCTCAGTCATGATGCTGGGTAAAGACTACATGTTGGCCATTGTTATAGTGAATTACGAGGATATCTGGGGCGAGCAGTCATTTCAGACAGACCCTGATTTGCCTCCAGGATGGAAGATGATGACAGACATGGCTGGTATTTATTACTGGCACATTCCAACGGGCACCACACAGTGGGAGCGGCCAGCCCCATGCCATCCAGTGCCAACTGGACCCAGCCATGCCAGCCGCAAACACTCACTGGGTTCCCTGTCGCCTTCACCCACCCCAGATCATGAGTCGATGTCTCATGCCGATGTGTTTTTTGGAGCGTCGAGTCGTTCGGGCAGCACCACTTCTGACAGTTCGTCTGAGCCCGCTCCCATCCCGTCTTCTTCATGTCTGGACCCGACCCCCATCCTGTCCTCAAACTCATCCTCATCCT
>TCONS_00000420
ACCCCGGAGGAGGTTATAGCGTAGCGACAAGCCATACGGGAGGGGGAGGGTAGAAGGAATGCTGGGATTGGATGgaaggagagagagagcgaaAATGAGAAGGGggtaaaaaaagagagagggagattGAGCGTAGAGAGGTGAGCTGCATGTTTTTAACAGAGCAGAGGATGAGTCGAGGAGGTGAAAATCTGTAGAAGAGCGCTACGACATAATGCTGTCCAAGGAAaaacacattactttaaaaagATGGATTTTGCATACGTGGCACGAGATAAGGACACCCGGAtattaaaatgtcatgttttccGCTGTGACACCCCTGCCAAAGCCATCGCTACCAGTCTGCACGAAATCTGCTCTAGGATCATGGCAGAGCGCAAGAATGCCAAAGCTATGGCTGGAGGATCCCTACAGGACAGAACACATGCTGGCATCGACGTCCCATTACAAGCAGAGTTTCCCACACCAAAGACTGAACTGGTGCAGAAGTTCCAGGTGTTATATGTTGGCATGATGCCAGTTGC

Function

symbol description
apbb2b Predicted to enable amyloid-beta binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Alzheimer's disease and cognitive disorder. Orthologous to human APBB2 (amyloid beta precursor protein binding family B member 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0001540 amyloid-beta binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-73 Predicted to enable amyloid-beta binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Alzheimer's disease and cognitive disorder. Orthologous to human APBB2 (amyloid beta precursor protein binding family B member 2).

Ensembl:

ensembl_id ENSDARG00000099995

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000417 False 3326 mRNA 0.50 17 19930520 19989584
TCONS_00000418 False 2097 mRNA 0.52 18 19933065 19989062
TCONS_00000419 False 479 mRNA 0.54 3 19943803 19950795
TCONS_00000420 True 527 processed_transcript 0.49 4 19975591 19980987

Neighbor

gene id symbol gene type direction distance location
XLOC_000251 UBA6 coding upstream 44131 19849168 ~ 19886389 (+)
XLOC_000250 NA coding upstream 109325 19808441 ~ 19821195 (+)
XLOC_000249 FNIP2 coding upstream 127918 19764995 ~ 19802602 (+)
XLOC_000248 march1 coding upstream 174161 19708508 ~ 19756359 (+)
XLOC_000247 BX323590.2 coding upstream 224688 19705699 ~ 19705832 (+)
XLOC_000253 NA coding downstream 34348 20023932 ~ 20027926 (+)
XLOC_000254 NA coding downstream 37305 20026889 ~ 20029066 (+)
XLOC_000255 prss12 coding downstream 79951 20069535 ~ 20141844 (+)
XLOC_000256 NA coding downstream 156821 20146405 ~ 20147549 (+)
XLOC_000257 si:ch211-142c4.1 coding downstream 604069 20593653 ~ 20607152 (+)
XLOC_000239 NA non-coding upstream 665550 19253027 ~ 19264970 (+)
XLOC_000238 NA non-coding upstream 771235 19113197 ~ 19159285 (+)
XLOC_000233 NA non-coding upstream 1097077 18829172 ~ 18833443 (+)
XLOC_000260 CR762427.1 non-coding downstream 1264769 21254353 ~ 21254482 (+)
XLOC_000262 NA non-coding downstream 1341841 21331425 ~ 21341653 (+)

Expression


Co-expression Network