XLOC_000254



Basic Information


Item Value
gene id XLOC_000254
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20026889 ~ 20029066 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00002829
GTAGTGGTGGGCATATAGTTCTTAATTAGACGTTTTCTCTGTGACAGTTGTTTGATTTTTTTAGGTAACGAATGAACACACAACAGGCAGGAGAACAAGACTCACAAAGGGAACGGTGGCGATAACTTGTAGAATGCTAGAGAATAGCTTGGTCATTGCTGGAGCTTAGAGAGCAGGTAGAGCtttgttggtgctgtttttgctTTGTGCAGATTAGTGAGTAGAAGGCTCATAATGGGAACCACAGAGATATGCTTGAAGAGCTGATGCTCAGCAAAATGGTTGAGCTATGTTAGTCTTGCCTTTGTGTTTTGCAGACTGAAGTGGATCATGTGGAGAAACAAgag

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00002829 True 347 lncRNA 0.42 2 20026889 20029066

Neighbor


gene id symbol gene type direction distance location
XLOC_000252 apbb2b coding upstream 37305 19930520 ~ 19989584 (+)
XLOC_000251 UBA6 coding upstream 140500 19849168 ~ 19886389 (+)
XLOC_000250 NA coding upstream 205694 19808441 ~ 19821195 (+)
XLOC_000249 FNIP2 coding upstream 224287 19764995 ~ 19802602 (+)
XLOC_000248 march1 coding upstream 270530 19708508 ~ 19756359 (+)
XLOC_000255 prss12 coding downstream 40469 20069535 ~ 20141844 (+)
XLOC_000256 NA coding downstream 117339 20146405 ~ 20147549 (+)
XLOC_000257 si:ch211-142c4.1 coding downstream 564587 20593653 ~ 20607152 (+)
XLOC_000258 spock3 coding downstream 606124 20635190 ~ 20706296 (+)
XLOC_000259 CT583646.2 coding downstream 907645 20936711 ~ 20938512 (+)
XLOC_000247 BX323590.2 non-coding upstream 321057 19705699 ~ 19705832 (+)
XLOC_000239 NA non-coding upstream 761919 19253027 ~ 19264970 (+)
XLOC_000238 NA non-coding upstream 867604 19113197 ~ 19159285 (+)
XLOC_000233 NA non-coding upstream 1193446 18829172 ~ 18833443 (+)
XLOC_000260 CR762427.1 non-coding downstream 1225287 21254353 ~ 21254482 (+)
XLOC_000262 NA non-coding downstream 1302359 21331425 ~ 21341653 (+)
XLOC_000263 NA non-coding downstream 1471579 21500645 ~ 21501484 (+)
XLOC_000269 NA non-coding downstream 2481668 22510734 ~ 22518754 (+)

Expression



Co-expression Network