XLOC_000258 (spock3)


Basic Information

Item Value
gene id XLOC_000258
gene name spock3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20635190 ~ 20706296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000424
agagagagagagagagagagagagagagagagagagactgccgAGGATCAGTGGAGCCTTTGCACGGAGATCTTCAGTCAATGACAGCGCTCACATTCTCTTCTTGAAGATGCTTGTGCTGGTCGGTGTGTGCGCGCTGCTGATCGCCGGAGCTTCTGCCCGCAACGACAACGGCAATTTTTTGGACGACAAATGGTTGACCGGGAGATGGGACAAATTCAGAGATGAACCAGGAACATGGAGCCCAGGAAAGCCATTCGATCAAGTAAAATTCTTTCTCCTGACCACCCAGACTCAGAAACAACTGCTTAACCAATGGCCTCTGGACCCTGCCAAAGATCCATGTCTGAAGATAAAATGTGGCCGTCATAAAGTGTGTGTAGCTGAAGATTACCAAACACCCACCTGTGTCAGTCAGCGCAGGATGAGTTTTAAGGACATGAACTTGAACTCACCACTGCTGAAATGCAAAAGATGCCCAGTTGTGCACCCTTCACCTATTTGTGGAACAGATGGACACACTTATTCCAccaagtgtaAACTGGAATATCAAGCTTGTATCTCTGGAAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGTGCTCCAGGAAATCCAGCAGAGAAGAGAGAGTGCGGTAATGCAGAAATGACTGAAGTGGTGAGCAGATTACGAGAATGGATCACAGTTCTTCATGAGAGCGGCAATACTAACAAGAAATACAAGTTCCAGAAGCCAGAGAAGAAGGTGGACATGAGTAAAGTGCCGCTCTGCAAGGACTCTTTGGGCTGGATGTTTTCCAGACTAGACACAAACTTTGACCTTCATCTCGACCAATCTGAGTTGTCCAGCCTGAACTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAAACAGAGACAGGCTCGTCTCCAGCCAGGAGTGGTGCTCTTGCTTTCAGAGATATCAAG
>TCONS_00000425
agagagagagagactgccgAGGATCAGTGGAGCCTTTGCACGGAGATCTTCAGTCAATGACAGCGCTCACATTCTCTTCTTGAAGATGCTTGTGCTGGTCGGTGTGTGCGCGCTGCTGATCGCCGGAGCTTCTGCCCGCAACGACAACGGCAATTTTTTGGACGACAAATGGTTGACCGGGAGATGGGACAAATTCAGAGATGAACCAGGAACATGGAGCCCAGGAAAGCCATTCGATCAAGCTCTGGACCCTGCCAAAGATCCATGTCTGAAGATAAAATGTGGCCGTCATAAAGTGTGTGTAGCTGAAGATTACCAAACACCCACCTGTGTCAGTCAGCGCAGGATGAGTTTTAAGGACATGAACTTGAACTCACCACTGCTGAAATGCAAAAGATGCCCAGTTGTGCACCCTTCACCTATTTGTGGAACAGATGGACACACTTATTCCAccaagtgtaAACTGGAATATCAAGCTTGTATCTCTGGAAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGTGCTCCAGGAAATCCAGCAGAGAAGAGAGAGTGCGGTAATGCAGAAATGACTGAAGTGGTGAGCAGATTACGAGAATGGATCACAGTTCTTCATGAGAGCGGCAATACTAACAAGAAATACAAGTTCCAGAAGCCAGAGAAGAAGGTGGACATGAGTAAAGTGCCGCTCTGCAAGGACTCTTTGGGCTGGATGTTTTCCAGACTAGACACAAACTTTGACCTTCATCTCGACCAATCTGAGTTGTCCAGCCTGAACTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAAACAGAGACAGGCTCGTCTCCAGCCAGGAGTGGTGCTCTTGCTTTCAGAGATATCAAGAGGCTCCCTGTCAATCAGAGATCACCATCATCCACAAACAGCAGGCTGGCAAGAAGCTACTGGGTCCGTACGTCCCCTCCTGTGATGAGGATGGTTTCTATCGGCCTCAGCAGTGTCATGGCAGCAGTGGTCAGTGCTGGTGTGTAGACCGCTATGGAAATGAGCTTGCGGGGTCTCATACTCATGGACCTGCTGAATGTGTGGTGGAGTCTTCTGGAGATTTTGGCAGCGGTGACTCTCTTCTCTCGGATGACGAGGACGGCGATGTTGTAAATGATGAAGAGGAAATGGGAGACGACGATGATGAATATGACCAAGCTGATGATGAGTACAGCTACCTGTCATAATCCGCTTTccgttgtttttttattattattgtttgaaaacatttgaaAAGAAGGAaccaaataaatcaaaaaataaaacaga
>TCONS_00000426
GACAGCGCTCACATTCTCTTCTTGAAGGTGACGCATAAGGGAATATCGCAGCGGGTTTTCGGTGTCTTCTGTCGGTGTGTTTATCAGTTTGTGTTGATTTCTCTCTCGATCTCGATGCAGATGCTTGTGCTGGTCGGTGTGTGCGCGCTGCTGATCGCCGGAGCTTCTGCCCGCAACGACAACGGCAATTTTTTGGACGACAAATGGTTGACCGGGAGATGGGACAAATTCAGAGATGAGGTGGAGGAACCAGGAACATGGAGCCCAGGAAAGCCATTCGATCAAGCTCTGGACCCTGCCAAAGATCCATGTCTGAAGATAAAATGTGGCCGTCATAAAGTGTGTGTAGCTGAAGATTACCAAACACCCACCTGTGTCAGTCAGCGCAGGATGAGTTTTAAGGACATGAACTTGAACTCACCACTGCTGAAATGCAAAAGATGCCCAGTTGTGCACCCTTCACCTATTTGTGGAACAGATGGACACACTTATTCCAccaagtgtaAACTGGAATATCAAGCTTGTATCTCTGGAAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGTGCTCCAGGAAATCCAGCAGAGAAGAGAGAGTGCGGTAATGCAGAAATGACTGAAGTGGTGAGCAGATTACGAGAATGGATCACAGTTCTTCATGAGAGCGGCAATACTAACAAGAAATACAAGTTCCAGAAGCCAGAGAAGAAGGTGGACATGAGTAAAGTGCCGCTCTGCAAGGACTCTTTGGGCTGGATGTTTTCCAGACTAGACACAAACTTTGACCTTCATCTCGACCAATCTGAGTTGTCCAGCCTGAACTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAAACAGAGACAGGCTCGTCTCCAGCCAGGAGTGGTGCTCTTGCTTTCAGAGATATCAAGAGGCTCCCTGTCAATCAGAGATCACCATCATCCACAAACAGCAGGCTGGCAAGAAGCTACTGGGTCCGTACGTCCCCTCCTGTGATGAGGATGGTTTCTATC
>TCONS_00000427
TGCAGATGCTTGTGCTGGTCGGTGTGTGCGCGCTGCTGATCGCCGGAGCTTCTGCCCGCAACGACAACGGCAATTTTTTGGACGACAAATGGTTGACCGGGAGATGGGACAAATTCAGAGATGAACCAGGAACATGGAGCCCAGGAAAGCCATTCGATCAAGCTCTGGACCCTGCCAAAGATCCATGTCTGAAGATAAAATGTGGCCGTCATAAAGTGTGTGTAGCTGAAGATTACCAAACACCCACCTGTGTCAGTCAGCGCAGGATGAGTTTTAAGGACATGAACTTGAACTCACCACTGCTGAAATGCAAAAGATGCCCAGTTGTGCACCCTTCACCTATTTGTGGAACAGATGGACACACTTATTCCAccaagtgtaAACTGGAATATCAAGCTTGTATCTCTGGAAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGTGCTCCAGGAAATCCAGCAGAGAAGAGAGAGTGCGGTAATGCAGAAATGACTGAAGTGGTGAGCAGATTACGAGAATGGATCACAGTTCTTCATGAGAGCGGCAATACTAACAAGAAATACAAGTTCCAGAAGCCAGAGAAGAAGGTGGACATGAGTAAAGTGCCGCTCTGCAAGGACTCTTTGGGCTGGATGTTTTCCAGACTAGACACAAACTTTGACCTTCATCTCGACCAATCTGAGTTGTCCAGCCTGAACTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAAACAGAGACAGGCTCGTCTCCAGCCAGGAGTGGTGCTCTTGCTTTCAGAGATATCAAGAGGCTCCCTGTCAATCAGAGATCACCATCATCCACAAACAGCAGGCTGGCAAGAAGCTACTGGGTCCGTACGTCCCCTCCTGTGATGAGGATGGTTTCTATCGGCCTCAGCAGTGTCATGGCAGCAGTGGTCAGTGCTGGTGTGTAGACCGCTATGGAAATGAGCTTGCGGGGTCTCATACTCATGGACCTGCTGAATGTGTGGTGGAGTCTTCTGGAGATTTTGGCAGCGGTGACTCTCTTCTCTCGGATGACGAGGACGGCGATGTTGTAAATGATGAAGAGGAAATGGGAGACGACGATGATGAATATGACCAAGCTGATGATGAGTACAGCTACCTGTCATAATCCGCTTTccgttgtttttttattattattgtttgaaaacatttgaaAAGAAGGAaccaaataaatcaaaaaataaaacagactttCATTTGGTCTTAAAGCACGTTTCTAGGTGACCTCAGCAGAGTGCAGTACTAACATTACTAAAGTGTTCATCGCCCCTGTGCTGTAGAACATTTGTACAAAATTAATACCAAGCCTCGATAACCACATTTAATTTGTATTCCATCTATTACATTCATCCAAAGTGAATAAGTGTATCGACAAACCTAGAAGTTCAGGAATTCATAAGTGGATTTTGATAAGAGATTCATTTAAATGTTTGCACttataaacatgcacacacaaatgacATGCCTAAACACAAATGAAGGAATAACTCCATGAGCAACCGTGACTCTATGAGACTTTACAGTCATGCCGTGAGGGATTAACGTCAATGTTTTGATTCATCGTAATAGTATAACCTATtgatttatcatatatatatatttttgtccatcAGCAGAACGAATACTTACACATTTTGAGAATTCATCAAAAGAtgttcagtattttaaatgtaaacgtGAACATTCTAAAGGAAAATCTTGTTTGAAATGGCTAAGATGTGACCGGGAGTGACCACATGTCAGACACACAATTAATTACAGTAGATGTGACTGCAGTCAATGTTATAAGAGGACAGAGTCATGCTAtttacagacacacaaacatacacacttaTCTTGTAGACACATTGGCAGTCCTTGGGCATGAGGTGCCTTTGACACAGCACGGAGGAGAAAACAGGTCTAGTGGGATAAGAAGGATAGAGATTTTTAGTGTTAGAATGTAGAATTCGACTGCCATAAGaatatacaagaaaaataaaaaagagacagagagagattttttttgcaTCATGTTCTCTGTTGTTTTGGTCTATAGGAGAAAGTGGACTTGATTAGTTAGTTTGCATATGTTACTGTAGACGACAAATCATATGATAGATGCTGCTGCTGTCACTTCTTCTCCTCGTTCCCTCTCAGAGCTTTTGCATTTTTGTCAGATTTGTTTTCATGATGTGCATATGAAAATATACGTTTTCTTCTATGGATATTGTggtgttttctgaaaaaaaaagacaataaaagaaATGGTCGAACAAGTTTATGATAATCATTTATGGAGGTTGAGGAACCACCTTTATCAGTGTTGTCCAGATGTTGTCATAGAGATAACACTTttcttttgttggtttgtttgttttttacagtatctatattatttgctcaaataaaGTTACACAGACCAAAA
>TCONS_00000428
ATGCTTGTGCTGGTCGGTGTGTGCGCGCTGCTGATCGCCGGAGCTTCTGCCCGCAACGACAACGGCAATTTTTTGGACGACAAATGGTTGACCGGGAGATGGGACAAATTCAGAGATGAGGTGGAGGAACCAGGAACATGGAGCCCAGGAAAGCCATTCGATCAAGCTCTGGACCCTGCCAAAGATCCATGTCTGAAGATAAAATGTGGCCGTCATAAAGTGTGTGTAGCTGAAGATTACCAAACACCCACCTGTGTCAGTCAGCGCAGGATGAGTTTTAAGGACATGAACTTGAACTCACCACTGCTGAAATGCAAAAGATGCCCAGTTGTGCACCCTTCACCTATTTGTGGAACAGATGGACACACTTATTCCAccaagtgtaAACTGGAATATCAAGCTTGTATCTCTGGAAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGTGCTCCAGGAAATCCAGCAGAGAAGAGAGAGTGCGGTAATGCAGAAATGACTGAAGTGGTGAGCAGATTACGAGAATGGATCACAGTTCTTCATGAGAGCGGCAATACTAACAAGAAATACAAGTTCCAGAAGCCAGAGAAGAAGGTGGACATGAGTAAAGTGCCGCTCTGCAAGGACTCTTTGGGCTGGATGTTTTCCAGACTAGACACAAACTTTGACCTTCATCTCGACCAATCTGAGTTGTCCAGCCTGAACTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAAACAGAGACAGGCTCGTCTCCAGCCAGGAGTGGTGCTCTTGCTTTCAGAGATATCAAGAGGCTCCCTGTCAATCAGAGATCACCATCATCCACAAACAGCAGGCTGGCAAGAAGCTACTGGGTCCGTACGTCCCCTCCTGTGATGAGGATGGTTTCTATCGGCCTCAGCAGTGTCATGGCAGCAGTGGTCAGTGCTGGTGTGTAGACCGCTATGGAAATGAGCTTGCGGGGTCTCATACTCATGGACCTGCTGAATGTGTGGTGGAGTCTTCTGGAGATTTTGGCAGCGGTGACTCTCTTCTCTCGGATGACGAGGACGGCGATGTTGTAAATGATGAAGAGGAAATGGGAGACGACGATGATGAATATGACCAAGCTGATGATGAGTACAGCTACCTGTCATAA

Function

symbol description
spock3 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; nervous system; and neural tube. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-24 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; nervous system; and neural tube. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3).

Ensembl:

ensembl_id ENSDARG00000070266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000424 False 971 mRNA 0.48 9 20635190 20695115
TCONS_00000425 False 1322 mRNA 0.48 11 20635214 20705079
TCONS_00000426 False 1039 mRNA 0.49 10 20635272 20700456
TCONS_00000427 False 2459 mRNA 0.41 10 20635387 20706296
TCONS_00000428 True 1164 mRNA 0.49 11 20635392 20704997

Neighbor

gene id symbol gene type direction distance location
XLOC_000257 si:ch211-142c4.1 coding upstream 28038 20593653 ~ 20607152 (+)
XLOC_000256 NA coding upstream 487641 20146405 ~ 20147549 (+)
XLOC_000255 prss12 coding upstream 493346 20069535 ~ 20141844 (+)
XLOC_000254 NA coding upstream 606124 20026889 ~ 20029066 (+)
XLOC_000253 NA coding upstream 607264 20023932 ~ 20027926 (+)
XLOC_000259 CT583646.2 coding downstream 230415 20936711 ~ 20938512 (+)
XLOC_000260 CR762427.1 coding downstream 548057 21254353 ~ 21254482 (+)
XLOC_000261 med28 coding downstream 603090 21309386 ~ 21312596 (+)
XLOC_000262 NA coding downstream 625129 21331425 ~ 21341653 (+)
XLOC_000263 NA coding downstream 794349 21500645 ~ 21501484 (+)
XLOC_000250 NA non-coding upstream 813995 19808441 ~ 19821195 (+)
XLOC_000247 BX323590.2 non-coding upstream 929358 19705699 ~ 19705832 (+)
XLOC_000269 NA non-coding downstream 1804438 22510734 ~ 22518754 (+)
XLOC_000270 CR376846.1 non-coding downstream 1814916 22521212 ~ 22521326 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_01172551_01191348 SPOCK3 coding CI01000339 null 1171336 ~ 1191348 (-)