RNA id: TCONS_00000428


Basic Information

Item Value
RNA id TCONS_00000428
length 1164
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_000258
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20635190 ~ 20706296 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTTGTGCTGGTCGGTGTGTGCGCGCTGCTGATCGCCGGAGCTTCTGCCCGCAACGACAACGGCAATTTTTTGGACGACAAATGGTTGACCGGGAGATGGGACAAATTCAGAGATGAGGTGGAGGAACCAGGAACATGGAGCCCAGGAAAGCCATTCGATCAAGCTCTGGACCCTGCCAAAGATCCATGTCTGAAGATAAAATGTGGCCGTCATAAAGTGTGTGTAGCTGAAGATTACCAAACACCCACCTGTGTCAGTCAGCGCAGGATGAGTTTTAAGGACATGAACTTGAACTCACCACTGCTGAAATGCAAAAGATGCCCAGTTGTGCACCCTTCACCTATTTGTGGAACAGATGGACACACTTATTCCAccaagtgtaAACTGGAATATCAAGCTTGTATCTCTGGAAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGTGCTCCAGGAAATCCAGCAGAGAAGAGAGAGTGCGGTAATGCAGAAATGACTGAAGTGGTGAGCAGATTACGAGAATGGATCACAGTTCTTCATGAGAGCGGCAATACTAACAAGAAATACAAGTTCCAGAAGCCAGAGAAGAAGGTGGACATGAGTAAAGTGCCGCTCTGCAAGGACTCTTTGGGCTGGATGTTTTCCAGACTAGACACAAACTTTGACCTTCATCTCGACCAATCTGAGTTGTCCAGCCTGAACTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAAACAGAGACAGGCTCGTCTCCAGCCAGGAGTGGTGCTCTTGCTTTCAGAGATATCAAGAGGCTCCCTGTCAATCAGAGATCACCATCATCCACAAACAGCAGGCTGGCAAGAAGCTACTGGGTCCGTACGTCCCCTCCTGTGATGAGGATGGTTTCTATCGGCCTCAGCAGTGTCATGGCAGCAGTGGTCAGTGCTGGTGTGTAGACCGCTATGGAAATGAGCTTGCGGGGTCTCATACTCATGGACCTGCTGAATGTGTGGTGGAGTCTTCTGGAGATTTTGGCAGCGGTGACTCTCTTCTCTCGGATGACGAGGACGGCGATGTTGTAAATGATGAAGAGGAAATGGGAGACGACGATGATGAATATGACCAAGCTGATGATGAGTACAGCTACCTGTCATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-24 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; nervous system; and neural tube. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3).

Ensembl:

ensembl_id ENSDART00000166479

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003062 lncRNA upstream 487843 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00002829 lncRNA upstream 606326 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00002828 lncRNA upstream 607466 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00000412 lncRNA upstream 814197 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00000398 lncRNA upstream 1169172 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00003063 lncRNA downstream 231728 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003064 lncRNA downstream 626428 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA downstream 626607 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003066 lncRNA downstream 795648 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00000439 lncRNA downstream 1246261 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00000423 mRNA upstream 28240 20593653 ~ 20607152 (+) True XLOC_000257
TCONS_00000422 mRNA upstream 493548 20084389 ~ 20141844 (+) True XLOC_000255
TCONS_00000421 mRNA upstream 496745 20069535 ~ 20138647 (+) False XLOC_000255
TCONS_00000418 mRNA upstream 646330 19933065 ~ 19989062 (+) False XLOC_000252
TCONS_00000429 mRNA downstream 231714 20936711 ~ 20938512 (+) False XLOC_000259
TCONS_00000431 mRNA downstream 604389 21309386 ~ 21312596 (+) False XLOC_000261
TCONS_00000432 mRNA downstream 604407 21309404 ~ 21312088 (+) True XLOC_000261
TCONS_00000433 mRNA downstream 858314 21563311 ~ 21566376 (+) False XLOC_000264
TCONS_00000434 mRNA downstream 858337 21563334 ~ 21573013 (+) False XLOC_000264
TCONS_00000420 other upstream 654405 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 816296 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 819943 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000408 other upstream 929560 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000400 other upstream 1095753 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000430 other downstream 549356 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000435 other downstream 859509 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000444 other downstream 1816215 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 2569925 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 2799337 23504334 ~ 23505103 (+) False XLOC_000281

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_01172551_01191348.mRNA True 2081 mRNA 0.41 7 CI01000339 1171336 ~ 1191348 (-)