RNA id: TCONS_00003063


Basic Information

Item Value
RNA id TCONS_00003063
length 1719
lncRNA type read_through
GC content 0.35
exon number 1
gene id XLOC_000259
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20936711 ~ 20938512 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCCGCGGTCCAGCTTCCGGTCTAGGTGATTTTAAGCGGAGGTAAGCAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTACGTAATTCTGCCTCAAAGTGTCAGGTAAAAACAGGGCAGGAATAAGATCTCAGTGAGAGCTCATTACTACCGATAGGTCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAGGACAGCATAACTTACATGTGAAATTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTCAGTTCGGATAATTACAGAAACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatgtattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCATAGTTGATATTTATTGCTGAAACAGTGGAGATGGCAGATGCAGTGTAACAGTGTAGATAGCATGCTTTCTAATTAGTcgataacattgtaattaaatgggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctattgcaatatttattattatttatattaatgaacaaatgcttattcattgtgcttgttaactcacaatgtaatagctaatgttaacaagcatgactttggatttttattcattttcaaattagtttaacaatgctaactattaaatattaaatagttattttaatagtgagcaaatacattaattaatgaaaccttattttaaagtgtgactaaagggagctacttttaattaatttaaattaatgatttactgtgtagtttaatctgatgatattgctgcagatgcctttaaaaagaagatattttgaagaaagctgaaaacctgtaaccattgacttccatagtaggaaaaagaactactatgaatatcagtggttgcaagtttccagctttcttcaaagtatttttgtttgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctTTAATGACTCTTTAAAAACCTAATATtattcttgtttctgttttctagGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgctttcccagacagcccattactctgaaatgtgtaatgtgtgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagatgggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCGTTGTTTCTgttcatctgaataaaatatttttttcaaaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003062 lncRNA upstream 789176 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00002829 lncRNA upstream 907659 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00002828 lncRNA upstream 908799 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00000412 lncRNA upstream 1115530 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00000398 lncRNA upstream 1470505 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00003064 lncRNA downstream 392982 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA downstream 393161 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003066 lncRNA downstream 562202 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00000439 lncRNA downstream 1012815 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003067 lncRNA downstream 1572291 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00000427 mRNA upstream 230429 20635387 ~ 20706296 (+) False XLOC_000258
TCONS_00000425 mRNA upstream 231646 20635214 ~ 20705079 (+) False XLOC_000258
TCONS_00000428 mRNA upstream 231728 20635392 ~ 20704997 (+) True XLOC_000258
TCONS_00000426 mRNA upstream 236269 20635272 ~ 20700456 (+) False XLOC_000258
TCONS_00000424 mRNA upstream 241610 20635190 ~ 20695115 (+) False XLOC_000258
TCONS_00000431 mRNA downstream 370943 21309386 ~ 21312596 (+) False XLOC_000261
TCONS_00000432 mRNA downstream 370961 21309404 ~ 21312088 (+) True XLOC_000261
TCONS_00000433 mRNA downstream 624868 21563311 ~ 21566376 (+) False XLOC_000264
TCONS_00000434 mRNA downstream 624891 21563334 ~ 21573013 (+) False XLOC_000264
TCONS_00000436 mRNA downstream 787378 21725821 ~ 21815554 (+) False XLOC_000265
TCONS_00000420 other upstream 955738 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 1117629 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 1121276 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000408 other upstream 1230893 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000400 other upstream 1397086 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000430 other downstream 315910 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000435 other downstream 626063 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000444 other downstream 1582769 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 2336479 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 2565891 23504334 ~ 23505103 (+) False XLOC_000281

Expression Profile

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