XLOC_000265 (pax5)



Basic Information


Item Value
gene id XLOC_000265
gene name pax5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21725821 ~ 21815554 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00000436
CACGCTTAAAGATGTCAGCTTGAGAGAAAAAGACAGAGGAGGAAAAAGTTAGTTAGCCTATGTTATCCAAATGATCTGGATATACGCAACCACGCCATGCACGCTGTCTGAAGAAGGGCAGCGAGTGTGGCCTATACACGTTTgtgagtgaaagagagagaggagaagaaagagagagagggagagagagagagagaaagaggaagaaaGAGGGCATGAGCGCGCGGCTCTTTCTTGACTTTGCCCCATAATCGTTTCACGCTTCCTTCAGAGTCTCTTTTCCACCTAAAACGTTTAGTCTCACTCCAGTGAACAATTGCAACGGCGCAACAGGGAGCGGAAGAGTCACATTATTTCAAACTACCATTCGTCAAAACCACTGTTACAAAAAAGAGCAGAGAGAGCAGCAACAGAGGATATAGGAGAGGGAACTTTTGTGTTCTCACCCCCCCGCTCATCCCTCTGTCCAACCTCTAGCCACGGCATGGACTTGGACCAAAAGGGTCCATCTCTGCGCATCGGACGGTCGGggcATGGAGGGGTGAATCAGCTGGGTGGGGTGTTTGTAAATGGGCGGCCGTTGCCTGATGTGGTGAGGCAGAGGATAGTAGAGCTGGCCCATCAGGGTGTTCGCCCGTGTGACATCTCTCGCCAGCTCCGGGTCAGTCACGGTTGCGTCAGCAAGATACTGGGCAGGTATTATGAGACAGGCAGCATCAGGCCAGGGGTAATCGGAGGATCCAAACCAAAGGTTGCTACACCAAAAGTCGTTGACAAAATTGCTGATTACAAACGCCAAAACCCCACCATGTTTGCCTGGGAGATCCGAGACAGACTGCtggcagagagagtgtgtgacaATGACAGTGTGCCCAGCGTCAGCTCAATCAACAGAATTATTCGCACTAAAGTCCAGCAACCACCTGGCCAATCAGGAGCCGTTTCTGCGCATAATTTAGCCTCTACCGTGGCAGTGACGCAGGTTTCTGCAGTAACCAGTGATGCCGCAGGCTCCTCCTACTCCATCAGTGGAATTTTGGGCATTAGTTCACCTGCCGATGCCAGCAAGCGGAAGAGGGATGACCCTCTCCAGGATTCTCCATTGGCGAATGGCCACAGCCACTCGGGACGGGACTTCCTGCGGAAGCAGATGCGAGGAGAACTCTTCACACCACAGCAGCTCGAGACAACAGATTATTCGGCTATGGCATCTCTGGCTGGCGGATTGGAGGAGATGAAGAACAGCTTAGCCAATCAGACAGGGGCAGAGTTGGGATCCACAGTCGCAGGACCTCAGTCGTATCCACTCGTATCCGGTCGTGACCTGGCCAGCACAACACTCCCAGGATACCCTCCTCATGTCCCTCCGACGGGACAAGGCAGTTACTCCACACCCTCCCTCACTGGAATGGTACCTGGTGGAGATTTCTCTGGCAGTCCTTATTCCCATCCACAGTATTCAACATACAATGAGTCTTGGAGATTTGCAAACCCAAGTCTATTAGtgtttcaGCAGGAGTACGGTTCATTACTAGGCTCAGAGAGAGCAGCGTCATCGGGACTATTTCCTGGTCAAACCCCACAACCCACAGGATCTCCATATTACTATAGCGCAGCCACACGAGGAGCAGGAACGGCTGCCACCGCAACTGCCAGTGCTTACGATCGTCACTGA
>TCONS_00000437
ATGGAAATCCACTGCAAACACGACCCTTTCGCAGCAATGCACAggcATGGAGGGGTGAATCAGCTGGGTGGGGTGTTTGTAAATGGGCGGCCGTTGCCTGATGTGGTGAGGCAGAGGATAGTAGAGCTGGCCCATCAGGGTGTTCGCCCGTGTGACATCTCTCGCCAGCTCCGGGTCAGTCACGGTTGCGTCAGCAAGATACTGGGCAGGTATTATGAGACAGGCAGCATCAGGCCAGGGGTAATCGGAGGATCCAAACCAAAGGTTGCTACACCAAAAGTCGTTGACAAAATTGCTGATTACAAACGCCAAAACCCCACCATGTTTGCCTGGGAGATCCGAGACAGACTGCtggcagagagagtgtgtgacaATGACAGTGTGCCCAGCGTCAGCTCAATCAACAGAATTATTCGCACTAAAGTCCAGCAACCACCTGGCCAATCAGGAGCCGTTTCTGCGCATAATTTAGCCTCTACCGTGGCAGTGACGCAGGTTTCTGCAGTAACCAGTGATGCCGCAGGCTCCTCCTACTCCATCAGTGGAATTTTGGGCATTAGTTCACCTGCCGATGCCAGCAAGCGGAAGAGGGATGACCCTCTCCAGGATTCTCCATTGGCGAATGGCCACAGCCACTCGGGACGGGACTTCCTGCGGAAGCAGATGCGAGGAGAACTCTTCACACCACAGCAGCTCGAGACAACAGATTATTCGGCTATGGCATCTCTGGCTGGCGGATTGGAGGAGATGAAGAACAGCTTAGCCAATCAGACAGGGGCAGAGTTGGGATCCACAGTCGCAGGACCTCAGTCGTATCCACTCGTATCCGGTCGTGACCTGGCCAGCACAACACTCCCAGGATACCCTCCTCATGTCCCTCCGACGGGACAAGGCAGTTACTCCACACCCTCCCTCACTGGAATGGTACCTGGTGGAGATTTCTCTGGCAGTCCTTATTCCCATCCACAGTATTCAACATACAATGAGTCTTGGAGATTTGCAAACCCAAGTCTATTAGtgtttcaGCAGGAGTACGGTTCATTACTAGGCTCAGAGAGAGCAGCGTCATCGGGACTATTTCCTGGTCAAACCCCACAACCCACAGGATCTCCATATTACTATAGCGCAGCCACACGAGGAGCAGGAACGGCTGCCACCGCAACTGCCAGTGCTTACGATCGTCACTGA

Function


symbol description
pax5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within vestibular receptor cell development and vestibular reflex. Predicted to be located in nucleus. Is expressed in several structures, including B cell; chordo neural hinge; hindbrain neural keel; midbrain hindbrain boundary neural keel; and nervous system. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; focal segmental glomerulosclerosis 7; and renal coloboma syndrome. Orthologous to several human genes including PAX5 (paired box 5).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060118 vestibular receptor cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0060005 vestibular reflex biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-001030-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within vestibular receptor cell development and vestibular reflex. Predicted to be located in nucleus. Is expressed in several structures, including B cell; chordo neural hinge; hindbrain neural keel; midbrain hindbrain boundary neural keel; and nervous system. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; focal segmental glomerulosclerosis 7; and renal coloboma syndrome. Orthologous to several human genes including PAX5 (paired box 5).

Ensembl:

ensembl_id ENSDARG00000037383

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00000436 False 1675 mRNA 0.52 11 21725821 21815554
TCONS_00000437 True 1188 mRNA 0.54 11 21731382 21815554

Neighbor


gene id symbol gene type direction distance location
XLOC_000264 primpol coding upstream 152808 21563311 ~ 21573013 (+)
XLOC_000263 NA coding upstream 224337 21500645 ~ 21501484 (+)
XLOC_000262 NA coding upstream 384168 21331425 ~ 21341653 (+)
XLOC_000261 med28 coding upstream 413225 21309386 ~ 21312596 (+)
XLOC_000260 CR762427.1 coding upstream 471339 21254353 ~ 21254482 (+)
XLOC_000266 kdm4c coding downstream 121647 21937201 ~ 21971913 (+)
XLOC_000267 dnah6 coding downstream 187095 22002649 ~ 22235421 (+)
XLOC_000268 si:dkey-234d14.2 coding downstream 611581 22427135 ~ 22428853 (+)
XLOC_000269 NA coding downstream 695180 22510734 ~ 22518754 (+)
XLOC_000270 CR376846.1 coding downstream 705658 22521212 ~ 22521326 (+)
XLOC_000256 NA non-coding upstream 1578272 20146405 ~ 20147549 (+)
XLOC_000254 NA non-coding upstream 1696755 20026889 ~ 20029066 (+)
XLOC_000281 NA non-coding downstream 1673557 23489111 ~ 23506518 (+)
XLOC_000283 CT573447.1 non-coding downstream 1935545 23751099 ~ 23751213 (+)
XLOC_000285 dre-mir-218a-2 non-coding downstream 2051324 23866878 ~ 23866965 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_08091709_08137762 PAX5 coding CI01000300 null 8091583 ~ 8138748 (+)
bowfin (Amia calva) AMCG00017849 pax5 coding CM030131.1 CM030131.1 25250194 ~ 25262749 (+)