XLOC_000264 (primpol)


Basic Information

Item Value
gene id XLOC_000264
gene name primpol
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21563311 ~ 21573013 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000433
ACGACGTACATTTACGCGGGTTCCTCAAAATACGTGTTTCGGACTGtaaacatgcaaaaacaaaacagctaAGGAGTATAAAAGGAGAATAACAAGTAGGTGACCAAATCTATGCGTATCactaatttaaaaaaGTGACTGCAGTTTTCCTGAGCTCTTGTTCTGCTGGACTCTGAAGATCAAATCACATAGCATGAGAGAGATTTAGTCATACTCCAGTGTTTTGAGACAAGGATGACTGGCGGAAAGTGGCAGGACAGGGTGAAATCTGTGGAGCAGAGGGCATCATCCTTTCAGTCTTCTCCTTTGTCCTGTCCATACAAACCACGTCTCTCCCAGCCGTGGCAGCCATCCTCTATCTGGAGACTCTTCCCACGCCAGAATGCAGCCATTGCCTTTGCTCAGCACATTAAACAGGATGTGCACATATTTTCACTGGAGAAGGAAGGCAGTGATGCTGGACAGAGGATTTTCCTAGTGACCAGCTATAGTGAACTATGGCATTATTACAGCACTCACAGACATTCTCTGATGCACTGCTATGAAGTAATTCTGGAAGGGGCTGTCTGCAAACTCTACTTCGACTTAGAGTTTCATAAAGCCTCCAACAAAAATTTGGATGGAAAGATGATGGTTGCTAAACTAATTCAGTACGTATGTGAGAAGCTAGAGGAGGTGTATGGTCTACATTGCTCTGCAAAAGACGTCCTTGATCTGGACTCCAGCACCTCTGACAAGTTTAGTCATCATCTTATCTTCATGCTTCCCAATGCTGCATTTAAAGACAACTCCCATGTGGGACGGTTTATTCATGATATCCTTCATCCTGCTTTGACCAACCTTAAAAAAAG
>TCONS_00000434
CTCAAAATACGTGTTTCGGACTGtaaacatgcaaaaacaaaacagctaAGGAGTATAAAAGGAGAATAACAAGTGACTGCAGTTTTCCTGAGCTCTTGTTCTGCTGGACTCTGAAGATCAAATCACATAGCATGAGAGAGATTTAGTCATACTCCAGTGTTTTGAGACAAGGATGACTGGCGGAAAGTGGCAGGACAGGGTGAAATCTGTGGAGCAGAGGGCATCATCCTTTCAGTCTTCTCCTTTGTCCTGTCCATACAAACCACGTCTCTCCCAGCCGTGGCAGCCATCCTCTATCTGGAGACTCTTCCCACGCCAGAATGCAGCCATTGCCTTTGCTCAGCACATTAAACAGGATGTGCACATATTTTCACTGGAGAAGGAAGGCAGTGATGCTGGACAGAGGATTTTCCTAGTGACCAGCTATAGTGAACTATGGCATTATTACAGCACTCACAGACATTCTCTGATGCACTGCTATGAAGTAATTCTGGAAGGGGCTGTCTGCAAACTCTACTTCGACTTAGAGTTTCATAAAGCCTCCAACAAAAATTTGGATGGAAAGATGATGGTTGCTAAACTAATTCAGTACGTATGTGAGAAGCTAGAGGAGGTGTATGGTCTACATTGCTCTGCAAAAGACGTCCTTGATCTGGACTCCAGCACCTCTGACAAGTTTAGTCATCATCTTATCTTCATGCTTCCCAATGCTGCATTTAAAGACAACTCCCATGTGGGACGGTTTATTCATGATATCCTTCATCCTGCTTTGACCAACCTTAAAAAAAGCAATCCAGAGGCACCAGGAGAGAATAGAGATGATGTGGAAGGTACTCAGGCCAAGAGAAGAAAGACTGAAGAGAATGATCTTGGCTTTCTCACAGTGAAGAATGAAAAAGGACAAGAACAACTTTTTGTTGATTTGGGTGTCTACACAAAGAACAGAAACTTCCGTCTCTACAAATCCTCCAAACTGGGAAAGAATGCAGCCTTCATTGTGGCAGAAGACAACAAGTTTGTCCCAAATCCCTCCAAGCAAATCACAAAAGACGAGCGCATATTTCTAGCTTCTTTAATCACCAACGTCAGTTTTACAGGACAGAGGATATTGACGTATGATATGACACAGAAGAGCACAGCAGGATCTGAATGTCCAACCCTGGAGAGAGAGTCACACAGCTCTgATCTGCTGGGTGACCAGAAAACATCTCCTTTTAAAGAAGTAGATGAATTTGTGCTCACACTTGTGTGCAAAGATGGCATTCAAGGAAGCATCCGGCGATGGAACTACTTTGCATGTGAGCAGCTGCTAGTTTATGACATTGAGAAGTTCCGCTGGTGCCACAATGTGAAGCGCTTCCACAAGAGCAACAACATCATAATTGTGGTGGATCTTAAAGAGGAAGTGTGGTATCAGAAATGCCATGACCCTGAGTGCAGAAGACAGAACTACAGATCTTCTAGCTTTCCTCTGCCTCAGGAAGTCTGCATGAGCCACTTACTGATGGAGGATGAAGAGGATCAGGCTTATTTAACAGACGAGCTAGGGAACATTGAGCTCGCAGTGACTGCTCCAGCAGAGTCCACCTCGACTACCCCGTCTGAGGATACTGAGGGTTGGGGAGACTGGCCCGATGACCCTGCTTATCTGAGAGCTCTGCAGGAagtagaagaagaggaggaggacgaAGATGAGGAGGTACCTGATGAGCTTCTGCTCCAGGCagtcaatgagtgtgaatgatgaCAGTTTAACATGATGGACTTCATCATAAGCTTACTATAGTGCAGTATCCAAAGTTAATGTGTGTGCATTAATATATCAAATACAACATACATGTATGCTTAAATTTCTGCTTAACACCCCATTGTGTTTGTTTAAAGCTAATTTATTTccattaaatatttgtatttagatCTTGCAAGTGATTTTGCCATTAAAACGTTGCCAAAGTTATAA
>TCONS_00000435
GTGACTGCAGTTTTCCTGAGCTCTTGTTCTGCTGGACTCTGAAGATCAAATCACATAGCATGAGAGAGATTTAGTCATACTCCAGTGTTTTGAGACAAGGATGACTGGCGGAAAGTGGCAGGACAGGGTGAAATCTGTGGAGCAGAGGGCATCATCCTTTCAGTCTTCTCCTTTGTCCTGTCCATACAAACCACGTCTCTCCCAGCCGTGGCAGCCATCCTCTATCTGGAGACTCTTCCCACGCCAGAATGCAGCCATTGCCTTTGCTCAGCACATTAAACAGGATGTGCACATATTTTCACTGGAGAAGGAAGGCAGTGATGCTGGACAGAGGATTTTCCTAGTGACCAGCTATAGTGAACTATGGCATTATTACAGCACTCACAGACATTCTCTGATGCACTGCTATGAAGTAATTCTGGAAGGGGCTGTCTGCAAACTCTACTTCGACTTAGAGTTTCATAAAGCCTCCAACAAAAATTTGGATGGAAAGATGATGGTTGCTAAACTAATTCAGGACGGTTTATTCATGATATCCTTCATCCTGCTTTGACCAACCTTAAAAAAAGCAATCCAGAGGCACCAGGAGAGAATAGAGATGATGTGGAAGGTAC

Function

symbol description
primpol Predicted to enable chromatin binding activity; nucleotidyltransferase activity; and transition metal ion binding activity. Predicted to be involved in DNA metabolic process; mitochondrial DNA replication; and response to UV. Predicted to act upstream of or within DNA repair. Predicted to be located in replication fork. Predicted to be active in mitochondrial matrix and nucleus. Human ortholog(s) of this gene implicated in myopia. Orthologous to human PRIMPOL (primase and DNA directed polymerase).

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0009411 response to UV biological_process
GO:0042276 error-prone translesion synthesis biological_process
GO:0019985 translesion synthesis biological_process
GO:0043504 mitochondrial DNA repair biological_process
GO:0006264 mitochondrial DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005634 nucleus cellular_component
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003896 DNA primase activity molecular_function
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-051113-100 Predicted to enable chromatin binding activity; nucleotidyltransferase activity; and transition metal ion binding activity. Predicted to be involved in DNA metabolic process; mitochondrial DNA replication; and response to UV. Predicted to act upstream of or within DNA repair. Predicted to be located in replication fork. Predicted to be active in mitochondrial matrix and nucleus. Human ortholog(s) of this gene implicated in myopia. Orthologous to human PRIMPOL (primase and DNA directed polymerase).

Ensembl:

ensembl_id ENSDARG00000033273

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000433 False 851 mRNA 0.43 6 21563311 21566376
TCONS_00000434 False 1960 mRNA 0.43 14 21563334 21573013
TCONS_00000435 True 614 nonsense_mediated_decay 0.45 5 21564506 21566601

Neighbor

gene id symbol gene type direction distance location
XLOC_000263 NA coding upstream 61827 21500645 ~ 21501484 (+)
XLOC_000262 NA coding upstream 221658 21331425 ~ 21341653 (+)
XLOC_000261 med28 coding upstream 250715 21309386 ~ 21312596 (+)
XLOC_000260 CR762427.1 coding upstream 308829 21254353 ~ 21254482 (+)
XLOC_000259 CT583646.2 coding upstream 624799 20936711 ~ 20938512 (+)
XLOC_000265 pax5 coding downstream 152808 21725821 ~ 21815554 (+)
XLOC_000266 kdm4c coding downstream 364188 21937201 ~ 21971913 (+)
XLOC_000267 dnah6 coding downstream 429636 22002649 ~ 22235421 (+)
XLOC_000268 si:dkey-234d14.2 coding downstream 854122 22427135 ~ 22428853 (+)
XLOC_000269 NA coding downstream 937721 22510734 ~ 22518754 (+)
XLOC_000256 NA non-coding upstream 1415762 20146405 ~ 20147549 (+)
XLOC_000254 NA non-coding upstream 1534245 20026889 ~ 20029066 (+)
XLOC_000270 CR376846.1 non-coding downstream 948199 22521212 ~ 22521326 (+)
XLOC_000281 NA non-coding downstream 1916098 23489111 ~ 23506518 (+)
XLOC_000283 CT573447.1 non-coding downstream 2178086 23751099 ~ 23751213 (+)
XLOC_000285 dre-mir-218a-2 non-coding downstream 2293865 23866878 ~ 23866965 (+)

Expression


Co-expression Network