Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000436 |
| length | 1675 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 11 |
| gene id | XLOC_000265 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 21725821 ~ 21815554 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0060118 | vestibular receptor cell development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0060005 | vestibular reflex | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001030-2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within vestibular receptor cell development and vestibular reflex. Predicted to be located in nucleus. Is expressed in several structures, including B cell; chordo neural hinge; hindbrain neural keel; midbrain hindbrain boundary neural keel; and nervous system. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; focal segmental glomerulosclerosis 7; and renal coloboma syndrome. Orthologous to several human genes including PAX5 (paired box 5). |
| ensembl_id | ENSDART00000132602 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003066 | lncRNA | upstream | 224337 | 21500645 ~ 21501484 (+) | True | XLOC_000263 |
| TCONS_00003064 | lncRNA | upstream | 384168 | 21331425 ~ 21341653 (+) | False | XLOC_000262 |
| TCONS_00003065 | lncRNA | upstream | 384168 | 21331604 ~ 21341653 (+) | True | XLOC_000262 |
| TCONS_00003063 | lncRNA | upstream | 787378 | 20936725 ~ 20938443 (+) | True | XLOC_000259 |
| TCONS_00003062 | lncRNA | upstream | 1578272 | 20146405 ~ 20147549 (+) | True | XLOC_000256 |
| TCONS_00000439 | lncRNA | downstream | 135704 | 21951258 ~ 21953463 (+) | True | XLOC_000266 |
| TCONS_00003067 | lncRNA | downstream | 695180 | 22510734 ~ 22518754 (+) | False | XLOC_000269 |
| TCONS_00003068 | lncRNA | downstream | 695507 | 22511061 ~ 22518754 (+) | True | XLOC_000269 |
| TCONS_00000462 | lncRNA | downstream | 1563454 | 23379008 ~ 23380210 (+) | True | XLOC_000278 |
| TCONS_00000466 | lncRNA | downstream | 1673557 | 23489111 ~ 23506518 (+) | False | XLOC_000281 |
| TCONS_00000434 | mRNA | upstream | 152808 | 21563334 ~ 21573013 (+) | False | XLOC_000264 |
| TCONS_00000433 | mRNA | upstream | 159445 | 21563311 ~ 21566376 (+) | False | XLOC_000264 |
| TCONS_00000431 | mRNA | upstream | 413225 | 21309386 ~ 21312596 (+) | False | XLOC_000261 |
| TCONS_00000432 | mRNA | upstream | 413733 | 21309404 ~ 21312088 (+) | True | XLOC_000261 |
| TCONS_00000429 | mRNA | upstream | 787309 | 20936711 ~ 20938512 (+) | False | XLOC_000259 |
| TCONS_00000438 | mRNA | downstream | 121647 | 21937201 ~ 21971913 (+) | False | XLOC_000266 |
| TCONS_00000440 | mRNA | downstream | 187095 | 22002649 ~ 22222474 (+) | False | XLOC_000267 |
| TCONS_00000441 | mRNA | downstream | 187619 | 22003173 ~ 22235421 (+) | False | XLOC_000267 |
| TCONS_00000442 | mRNA | downstream | 358697 | 22174251 ~ 22179555 (+) | True | XLOC_000267 |
| TCONS_00000443 | mRNA | downstream | 611581 | 22427135 ~ 22428853 (+) | True | XLOC_000268 |
| TCONS_00000435 | other | upstream | 159220 | 21564506 ~ 21566601 (+) | True | XLOC_000264 |
| TCONS_00000430 | other | upstream | 471339 | 21254353 ~ 21254482 (+) | True | XLOC_000260 |
| TCONS_00000420 | other | upstream | 1744834 | 19975591 ~ 19980987 (+) | True | XLOC_000252 |
| TCONS_00000414 | other | upstream | 1906725 | 19814865 ~ 19819096 (+) | True | XLOC_000250 |
| TCONS_00000413 | other | upstream | 1910372 | 19808451 ~ 19815449 (+) | False | XLOC_000250 |
| TCONS_00000444 | other | downstream | 705658 | 22521212 ~ 22521326 (+) | True | XLOC_000270 |
| TCONS_00000457 | other | downstream | 1459368 | 23274922 ~ 23279702 (+) | True | XLOC_000276 |
| TCONS_00000467 | other | downstream | 1688780 | 23504334 ~ 23505103 (+) | False | XLOC_000281 |
| TCONS_00000472 | other | downstream | 1935545 | 23751099 ~ 23751213 (+) | True | XLOC_000283 |
| TCONS_00000478 | other | downstream | 2051324 | 23866878 ~ 23866965 (+) | True | XLOC_000285 |
