RNA id: TCONS_00000443



Basic Information


Item Value
RNA id TCONS_00000443
length 1173
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_000268
representative True

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22427135 ~ 22428853 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTTGGAGGTTGTAGCAGTTGCTGACATCGACTAAACATCTTTCCTTGTGAAAAACTTAAGCTATTCATGGCTTTTCAAACTAGCGAGGCTATTGGTGATTTGCTGATGTCCGAGCTACATACCCCGAAGTTTTTTGACAATCCACGGTGTAAGACCGAGATTGCCATCGCTATGACTGCGGACCAGAAATATCCCAGTGACACACCGTCAACAATGTGTTTCCAACTGGAGGACGACCAATCGAGAATGGAGGAACCAGTGGTGAAGCCGAGGAAAAAGAGCTTCTTCAAACTGCCCTCTTTCCTCAGAGCTCACCCGAAAAATGTGCAGTCCAGTCAAACACCTGACAGCTCCAATGATGAGCTGAAAGATAAAAGGAAGAAAAAGAGCCGGCTGGCGTCGTTCTTCAGAGCGTGCAGAAAACACATGAAGATCTCTTGCCTCACGTCCAACAAAGAGGAGATggaggatgaagaggaggaagagcAGAAAGAGCTCCCAAACTCTCCAGACAAAGGCACTGATGATGACTCTCTGTGCTGCTCCACGTTTGAGGTCTGTCTGGATgtgaattctgtcatcattcatgaAATACGCTCTGTGGAGGACGACATGGACGTCAGTAAAGGAGAAATCACACTGACACACACTAACTTATCCTGCGGAGATCaaaaggaggaaaaggaggacAGGATTATGGAGGAGGAGGTGAAAGACAAGAAAAAGAGAAGGAGAAGGAAGAAAGTGGAAAAGGTGGAGGAGCCAGTGATGGAGAAAGAGGAGGAAAAGATTAAAGAGGAGGACGGAGGGAAAGAGAGAAAGATAAAAGAGGAAGAAATACATGAGACAATGATGGAGAAGGAGGTGGACAAgattgaggaggaggaggatggaaggaaaaagagaaagagaaggatGAAAGAGGAGAAAAAGGAGAGAAGGAGCAGGAGGAAAGAGGAGAAGGAGATGAGCAGGATAAAAGAAGAGAAGGAAAGTGAGGAGAATGAGGAGGACATTGAGATGATGGACTTGAAAGTGGAGATAAAGGATGAGGAGGAGGTGAAGAAGAGAAACAGAAAGAGGAAAATCAGCAGCAGGGTGAGCAGGAGAATGATGAGAAAGAGAAATAAGAGGAGGAGAATGAGAGGATGATGGAGGAGGTggagaaaaaca

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000147193

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00000439 lncRNA upstream 473672 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 925651 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003064 lncRNA upstream 1085482 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA upstream 1085482 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003063 lncRNA upstream 1488692 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003067 lncRNA downstream 81881 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA downstream 82208 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000462 lncRNA downstream 950155 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 1060258 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 1076813 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00000441 mRNA upstream 191714 22003173 ~ 22235421 (+) False XLOC_000267
TCONS_00000440 mRNA upstream 204661 22002649 ~ 22222474 (+) False XLOC_000267
TCONS_00000442 mRNA upstream 247580 22174251 ~ 22179555 (+) True XLOC_000267
TCONS_00000438 mRNA upstream 455222 21937201 ~ 21971913 (+) False XLOC_000266
TCONS_00000436 mRNA upstream 611581 21725821 ~ 21815554 (+) False XLOC_000265
TCONS_00000445 mRNA downstream 226022 22654875 ~ 22665098 (+) False XLOC_000271
TCONS_00000446 mRNA downstream 226055 22654908 ~ 22664172 (+) True XLOC_000271
TCONS_00000447 mRNA downstream 262403 22691256 ~ 22703383 (+) True XLOC_000272
TCONS_00000448 mRNA downstream 414082 22842935 ~ 22873915 (+) False XLOC_000273
TCONS_00000449 mRNA downstream 422408 22851261 ~ 22876174 (+) False XLOC_000273
TCONS_00000435 other upstream 860534 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 1172653 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 2446148 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 2608039 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 2611686 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000444 other downstream 92359 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 846069 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 1075481 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 1322246 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 1438025 23866878 ~ 23866965 (+) True XLOC_000285

Expression Profile


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