RNA id: TCONS_00000445


Basic Information

Item Value
RNA id TCONS_00000445
length 1881
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_000271
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22654875 ~ 22665098 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAATTTCACTCCTCATTTCTGCTGCTTGCTCGCTTTGTCCTGTTGCTCATCCGAACTTAGAAAGTCTTCTCCCGCTTCGAACTCTTTGAAGTAGCCTATAGTCCACGAATCTCAAAGATGGCTGGCAGAGGAACAGTGAAGCCCCAAAGTGGATTCAATGCTAACAGCGATGCTGAGGTTCTCTATAAGGCCATGAAAGGACTTGgcACGGATGAGGATTCTATTCTCCAGCTTCTCACCAAACGCAGTAATGGCCAACGTCAAGAAATCAAAGCTGCGTACAAAACCCTGCATGGAAAGGATTTGGTGAATGATTTAAAGTCAGAGCTGGGAGGGAAGTTTGAGGATCTTATAGTTGCTCTGATGACTCCTCCCATCATCTATGAGGTCACATGTCTGAGAAATGCCATCAAGGGAGCAGGCACAGATGAGAAAGTGCTGATTGAGATCTTGGCATCTCGCTCTCCTAATGAAGTCAATGAGATCAAAAGTTCATACAAGCGAGAGCATGATAAGGACCTGGAGGAGGATGTGACTGGTGATACCGGGGGACATTTCGAAAGAATGCTTGTTGTTTTGCTACAGGCCAGTAGACAGCAAGGAATTCAAGAGAGCCTTATCCAAAGTGATGCTCAGGCTCTGTTTGCTGCGGGAGAACAGAAGTATGGAACTGATGAAGGCCAGTTCATCACTATACTGGGAAACCGTAGTAATGCTCACCTCAGGAGAGTGTTTGAGGAGTATAGAAAGCTGTCAGGGTTTGAGATTGAGGAAAGCATCCAGAGAGAGACCTCAGGAAGCCTCCAAGAAATACTGCTGGCTGTGGTGAAGTGTGCCCGCAGTGTACCAGGTTATTTTGCTGACAGCCTTTACGCTGCCATGAAGGGGGCAGGCACTGACGATCAGACACTGATCAGGATCATGGTGACACGCAGCGAGGTGGACTTGCTGGACATTCGTGCTGAATTCCGCAAGCGTTTTGCAACCTCCCTGCACAAAATGATTCAGAGTGACACTTCAGGAGACTACCGTAAAACCCTGCTGCTGCTGTGTGGCGGTGATGATGCATAAACCATGTCTTCCTCTCTGCCCAGCTCTGATCCCAGGATTTCGCTCTCATCTGTGGGTCAGTGGGATGAGGAACCAGTCCACCTCTATACCCGACTGAGTATAAATGACAAAAACATAACATTTCACATCAGTAGAAGGATCTCTTGACTCACTGTGAAGATGCACTGCATAGCACAGATTTACTTAATTCAAGTAAGCAATAAGCGAATTTTGTCTTTCACATTTCACATGATGTGTAATAGATTAAGAGTGAAATCTGTAAACTACACAAGTAACATTCACTTTATGCTACAAGTTTGAAAGATAATAACTTTTTTTCGGCTTGACCTATGAAAtctattactgaaaaaaaaagatgaatttgGCCTTATGAAGTTTATGAACCTCTATTAACTCAGCGCTTGATAAAGAAAAGCAAAGACTCCTTGTACTTGATGAAGCAATGTTTTATATGTATTCAGctatttttcacttatttattgtttgtatgcTCACTAACTGCAAAGCATAACAATAttacaatcaaaaatataattaGCTTCTGTTTATTTCACTGTATCTTTAACTGCTTGTAGGTTTTAATGTGTGTGCTAGTTAAAGGAATGGTTCACTATACTTATATCAGTGGTTTGGAGAACGAAATGTCATTTCATTGATTTCCTACTTCAGGTTTAAAACATGGTGCCAGTCATTGGCTATGTAAGCGATACTCAGTTAAAAGCTGAATATAACGGTGctactaaaaaaaaaaggtttaacatTTCATTGATTTTATGTTATCAATAAACCCTCATGAAATAAAGGCAAA

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0050819 negative regulation of coagulation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9076 Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of cell motility. Located in cytoplasm. Is expressed in atrioventricular canal; olfactory system; swim bladder; swim bladder bud; and visceral peritoneum. Human ortholog(s) of this gene implicated in autoimmune disease of the nervous system; myocardial infarction; and systemic scleroderma. Orthologous to human ANXA5 (annexin A5).

Ensembl:

ensembl_id ENSDART00000019698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003067 lncRNA upstream 136121 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA upstream 136121 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000439 lncRNA upstream 701412 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1153391 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003064 lncRNA upstream 1313222 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00000462 lncRNA downstream 713910 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 824013 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 840568 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00002830 lncRNA downstream 1453269 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 1461282 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00000443 mRNA upstream 226022 22427135 ~ 22428853 (+) True XLOC_000268
TCONS_00000441 mRNA upstream 419454 22003173 ~ 22235421 (+) False XLOC_000267
TCONS_00000440 mRNA upstream 432401 22002649 ~ 22222474 (+) False XLOC_000267
TCONS_00000442 mRNA upstream 475320 22174251 ~ 22179555 (+) True XLOC_000267
TCONS_00000438 mRNA upstream 682962 21937201 ~ 21971913 (+) False XLOC_000266
TCONS_00000447 mRNA downstream 26158 22691256 ~ 22703383 (+) True XLOC_000272
TCONS_00000448 mRNA downstream 177837 22842935 ~ 22873915 (+) False XLOC_000273
TCONS_00000449 mRNA downstream 186163 22851261 ~ 22876174 (+) False XLOC_000273
TCONS_00000450 mRNA downstream 186647 22851745 ~ 22858900 (+) False XLOC_000273
TCONS_00000451 mRNA downstream 186648 22851746 ~ 22872274 (+) True XLOC_000273
TCONS_00000444 other upstream 133549 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 1088274 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 1400393 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 2673888 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 2835779 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000457 other downstream 609824 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 839236 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 1086001 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 1201780 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000480 other downstream 1449427 24114525 ~ 24114558 (+) True XLOC_000287

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU474738 True 120 lncRNA 0.38 1 CI01000300 8568638 ~ 8568757 (+)