RNA id: TCONS_00000442


Basic Information

Item Value
RNA id TCONS_00000442
length 411
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_000267
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22002649 ~ 22235421 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcttcctgagggagagcgggaggttgccgcttggttaatactttacatttaaGCAAATCGTTGGATACGGTCTAAAGAGACAAAGAATGGTCTAAAGGTGATCAAGCTTACTGATGCAGGCTTTCTCCGAACACTAGAGAATGCCATCCGACTGGGCATGCCTGTTCTTCTAGAGGAGCTAAAAGAAACTCTGGACCCTGCTCTGGAGCCCATTCTTCTGAAGCAGACGTTTGTGTCAGGTGGCAGAACATTGATCCGACTTGGAGACTCTGACATCGACTATGATAAAAACTTCCGTTTTTACATGACCACCAAAATGGCCAATCCCCACTACCTTCCTGAGGTGTGCATCAAAGTGACCATAATCAACTTCACTGTTACTAAATCTGGACTGGAAGATCAAATTCTAAG

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0030286 dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0045505 dynein intermediate chain binding molecular_function
GO:0008569 ATP-dependent microtubule motor activity, minus-end-directed molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0051959 dynein light intermediate chain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-623 Predicted to enable dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and minus-end-directed microtubule motor activity. Acts upstream of or within determination of heart left/right asymmetry and epithelial cilium movement involved in determination of left/right asymmetry. Predicted to be located in cilium; cytoplasm; and microtubule. Predicted to be part of dynein complex. Is expressed in Kupffer's vesicle and testis. Orthologous to human DNAH6 (dynein axonemal heavy chain 6).

Ensembl:

ensembl_id ENSDART00000137429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000439 lncRNA upstream 220788 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 672767 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003064 lncRNA upstream 832598 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA upstream 832598 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003063 lncRNA upstream 1235808 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003067 lncRNA downstream 331179 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA downstream 331506 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000462 lncRNA downstream 1199453 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 1309556 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 1326111 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00000438 mRNA upstream 202338 21937201 ~ 21971913 (+) False XLOC_000266
TCONS_00000436 mRNA upstream 358697 21725821 ~ 21815554 (+) False XLOC_000265
TCONS_00000437 mRNA upstream 358697 21731382 ~ 21815554 (+) True XLOC_000265
TCONS_00000434 mRNA upstream 601238 21563334 ~ 21573013 (+) False XLOC_000264
TCONS_00000433 mRNA upstream 607875 21563311 ~ 21566376 (+) False XLOC_000264
TCONS_00000443 mRNA downstream 247580 22427135 ~ 22428853 (+) True XLOC_000268
TCONS_00000445 mRNA downstream 475320 22654875 ~ 22665098 (+) False XLOC_000271
TCONS_00000446 mRNA downstream 475353 22654908 ~ 22664172 (+) True XLOC_000271
TCONS_00000447 mRNA downstream 511701 22691256 ~ 22703383 (+) True XLOC_000272
TCONS_00000448 mRNA downstream 663380 22842935 ~ 22873915 (+) False XLOC_000273
TCONS_00000435 other upstream 607650 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 919769 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 2193264 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 2355155 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 2358802 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000444 other downstream 341657 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 1095367 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 1324779 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 1571544 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 1687323 23866878 ~ 23866965 (+) True XLOC_000285

Expression Profile

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