RNA id: TCONS_00000438


Basic Information

Item Value
RNA id TCONS_00000438
length 5044
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_000266
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21937201 ~ 21971913 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAGAGAGAGCTGTCATGAAGTAGAACAGCTGGGGATTTAAAGGGACTGGACTGCGTGCCCACGATCACACTACACTGAGGTCAAGCCTCTGGGAGGCAGGAGAGAGTGGTCAGGATGGCAGGTGTTGGGGCAAGTGCCCCTGCAAACCCTGCCTGTAAAATCATGACCTTCAGACCCACCATGGAGGAGTTTAAGGATTTCAACCAGTACCTGGTTTATATGGAGTCTCAGGGAGCTCATCGTGCTGGTCTGGCCAAGGTAATTCCACCCAAGGGCTGGAAGCCACGTCGCAATTATGATGATATTGATGATTTTGTTATTCAAGCACCTATTCAGCAGATGGTAGCTGGCCAATCAGGACTCTTCACCCAGTACAACATCCAGAAGAAGCCGCTCACTGTGCAAGAATTCCGCAGACTGGCTAACAGTGACATGTACTGTACACCGCGCTATCTGAACTATGAAGACCTGGAGAGGAAGTATTGGAAGAATCTGACATTCGTCTCGCCCATATATGGTGCTGATGTGAGCGGCACACTCTATGATGAGGACATTGAAGAGTGGAACATTGGCCACTTGAATTCAGTCTTGGACGTGATCGAGGAGGACTGCGGTGTGTCCATCCAGGGAGTAAACACACCCTATCTCTACTTTGGGATGTGGAAAACCAGCTTTTCCTGGCACACAGAGGATATGGACCTCTACAGCATTAACTACCTGCACTTTGGCGAACCCAAATCCTGGTATGCCATCCCTCCAGAACATGGAAAGAGACTTGAGCGGCTTGCTATAGGTTTCtttccaaacagctttaaaagctGTGAGGCGTTCCTGAGACACAAGATGACACTGATATCCCCCTCTGTACTCAAGAAATACAGCATACCATTTGATAAGATAACACAGGAAGCGGGAGAGTTTATGATCACATTTCCTTATGGTTACCACGCTGGCTTTAACCACGGCTTCAACTGTGCTGAATCCACCAATTTCGCCAGTATCCGGTGGATAGATTATGGAAAACTGGCTACGCAGTGTACATGCAGTAAGGATATGGTGAAGATCTCCATGGATCCATTTGTTAGACGATTTCAGCCGGATCGATACGAGATGTGGACGCAAGGCAAAGATTCATGCTCCCTGGATCACACTCTGCCTACACCAAGCACTACACCAGAGCTGCAGAGCTGGCTTCAGAGACGGCGAAGGAAAACACCCTCCACCAGtctcCATGCGCCTCGTTCATGCTCCAAACGACTGAAGACGGTGGACTCTGCACCGGTAAAGGGAAGCGGTCGAAGGAGTAGATCAGCAGCCTTAACTGCTAAAAAcaaggaagaggaagaggaagaccCAGTGAAACACCAGAAAGAATCACAGTACTCAAGTGAATTAAAAGGGCTTGCTGGTCGACAAATGTGTGTTGTTAAAGTAACAAGAGTGGAGAGCGACTTGCTGGCACAGTCTACAAGACAAGTCAAAGAAGCTTCCCCTGAGCGACTCTTGACCCCTACTCTCACCACCACATCCAGCCAAAATGACCCTGATGCGGGCCACACAAGCTCCCAGACGTCTTTAATATTGGATGAAGGACAAGTATCCAAAAACACAAACTCCACCGCCCAGTCTGAGCCTGAATCAACCTCAGAGAGTGACATCATTGTGGATGTGACTCTAGGCTCAGAAAGAACTGCTGAGAATCCTAATCAAACATTAAACTGTGAATCTGTCTCAGAAACCATTGCACCTTCTATTCCTGTGACCCATTCACTTACACTCCACTCCACTGGTGCTACAGTTTTATTTTCGGAAAGTGATTCCCAACAAGCTAAAATTGAAACGGAAGAGACAGTCATTGATACCTTGACCGAGGACAGCATCGATTGCGGCACGTCAGCACTTTACAAGGAGCAAAGCTCAATCAGTCTAGACCCTGCTCTTCAGGGTTCAGAACCTTCCATGAATAGAACAAACTCTGAAATCCAAACTACGCCATTTTGTGAAATGCCTCTTCTAATGCCCGAGCTCATTGAAGAGAGAGTCAATCCTCAGTGTCTCGCACCTGAAATGCCCTCGCTGACTCTCGCTATCCGACCGGACTCCGCAAATCATCAACCTTACAACAGTGCACCCATCCTCCATTTGGAAAAATCACACTCACCTCCTGTTATAACGGATGAAGTGAGAGGTTGTTCTGAAAGAGTTTGTCCGGATTGGCCCTTTATTTTACCAAAAGAAGGTGTGAGCCAATCACATAAGTCAATCTCAGACAGCTTCAAAGCAAAACCAACATCTGCTTCCTTTGCTCCACAATGGGGGACGCCAGAGGAGTCCAAACAAGAAGGAAATATACACAAATGCACATCAACAGACCAGACCACTCAACATGAATCCGTTTCGAACTGTACAACCCCTACTCGCAGTATTTTGCAAAGTTCTGCAACAACACGCATGGATTTTATAGACTCTAAAATGATTGAAGGAGTGGGCAAAGAAACTTCTCGATGTATCGAAGAGCAGTCCAGCTCTCTCACGTCCTCCCAGAGCAACTTTGCAGAATCCAAACCCTTCACAATTTGGAAAAACCTCAGCTCCGATAACCCTGCGGTGCTCATCGAGAGTTTGCAGCCCGAGTTGGTAGTAGGTCTTACCGCAGACTATGCCCATGATTCGTTACCGTACACCATGTGGTCAGAGTCAGGGTGCCAACAAGAAAAGTTCTCAGATTCTCCAAACTCTTCACCTCACACCCAGACCTGGACCAACCTGGAGCCCATTCCCATGCAGTGTTCTGATACAGAAGTGTCTGAAAACGCACCCTTAGATCTTAAGCAGGAGAACGAGGAGGTGGAACCGGCTGAATCGTGCGAGCTGAATGAGCAGGCGGGCTCTCAGGAACCTCAGGAAAGAGAGTTTAAAATTCAGGAGTATTACAGAAGTGTGAAATCAGAACACGATGGGTCTGTGAGCGACTCCGATTCGTGTGAATCAGGAGATAAGGGTGCTGACAGCAGCAGTGAATCCAGTGAGGAGAACCCCATGAGTGATCCAGAGTATGTGGAAACGGGTCTGGAACCAGGGGAAGTCTGTACATATCATATGCAAACGGTTAAGAAGACTGCCAAGAGTTGGCGTCACCCCCTCAGAAAACCCACAGCGAGAGCAGTGCCCAGTGCTGTCAAACAGCAGGCTGCCAGCGATGATGAGGTTATAGAGGAGTGTGCGAGTGAAGAAGATGAGCCAGAAACTGAGGAATGGGCAAAACCATTAGTGCATCTCTGGCAACACAGAAAAGCCCATTTTCAGTATGAACGAGAATACAACATGACCGCTGCAAAAAACGCTCCACACTGTGCTGTCTGCACACTTTTCATGCCATACCATCAGCCTGAGAACTTGGAGGAGAGAAGGCCTGAGGTGTCAATGGGGTCATGTTCCCTGGACGCAGGCTCAAGATCACGACCTCTGATCCCTGAAATCTGCTTTGCGTACCAGGAGGGTCCATGCCCGTTGAACACACTACTGGAGGAAGATGGATCCAGCCCTCTTGTGGTCTGCAGCAGCTGCTGTGTTCAAGTTCATGCCAgttgctatggtgtttctGCTCAGGATGTTGGCCCAGTGTGGACTTGTGACCGGTGTGTGAGTGAAGATCTGGCAGCTGGATGTTGTTTGTGCAACCTGAGGGGAGGTGCATTAAAAAGAACCTCAGATGACAGATGGGTCCATGTCATGTGTGCGGTGGGGCTCCCTGAGGTGAAGTTCATTGATGTGGTGAAAAGAGCTCCTATTGACATCAGTGCCGTACCTGTACAGAGATATAAACTTaaGTGTATTTATTGCCGTAACAGGATAAAACGGCTGTCTGGAGCTTGTATTCAGTGCTCGTGTGGCCGTTGCCCGACCTCGTTCCATGTCACCTGTGCTCATGCAGCTGGAGTGCCCATGGAGCCTGATGATTGGCCGTATGTGGTCTTCATCACCTGTCACAGACACCAGTCACGGAGCTCCAGTGCTAAAGTAAAAGTTAGCAAAAGCGAATTAGAAGTGGGCCAGACGGTGATCTCCAAACACAAAAACCTCCGGTACTACAGCTCACGTATTACTCAGGTCACGGCCCAGACATTTTACGAGGTCATGTTCGATGACGGCTCCTTCAGCAATGATACATTCCCTGAAGACATTGTGAGCAGAGACTGTGCTTTGCTTGGCCCTCCTGAAGTTGGGGAGACAGTTCAGGTGAAGTGGCCTGATGGACTTTTATATGGAGCCAAATATCTTGGCTCGAACACTTCATATATGTATCAGgTGGAGTTTGAAGATGGATCCCAAGTATTGGCAAAGCGAGAGGACATTTACACACTCAATGAAGACCTGCCCAAAAAAGTCAAAGGTCGTTTGTCCACGGCATCCAGCATGCGTTTCCAGGATGCATTCTTCACCACACAAGGTGAAAGGAAAAGACGACGCACACCGAATTCTCGATTCCAGACGGATTACATTGCCCATATCAGTCCTCGAACCTTTGCCAGGTTGTCAGAAACCCGCAGTAAAGCCAACTAATGGAGTTAAAAGAGCCCTTAAATAAGAAAAGGAGCTGCTTTCAATTATGTTTGAAGATTGTACATCACTGAGATCAGGATTTTTCAAAGCGGCAAAAGTGGTCTCATATGTCAGGGACAAGAATGTTTTTCTAAATTAGAAGTTTTCCTGTTATATTTCAGAGGTTTTTTCTAGCCTCGAATGGTATTCTGTAGCATCGTACTCTTGTCATTTCCTTTCATCACTGCTGAGACTAATTTTACCcgcatgctttttttttgtaaatgatttgTCGTGTACCGTCATGCACCATTCCTAGTCACTGATGTTATTAGTGTTGAGCTTacaattgtataaataaaaaaaatgctactgATGTCCGGCAAAGCACATGTCACCTTTTACTTAAAATATTGATCTCTGTATTCATTTGGCATTCTTTCTTTTCTATGTGGTGctgctgaaaaaataaataaataaagaagtgtTTGCTTTGTGA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0035097 histone methyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0032452 histone demethylase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-38 Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Acts upstream of or within blood vessel morphogenesis. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in autistic disorder; breast cancer; carcinoma (multiple); head and neck cancer; and withdrawal disorder. Orthologous to human KDM4C (lysine demethylase 4C).

Ensembl:

ensembl_id ENSDART00000087729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003066 lncRNA upstream 435717 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003064 lncRNA upstream 595548 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA upstream 595548 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003063 lncRNA upstream 998758 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003062 lncRNA upstream 1789652 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00003067 lncRNA downstream 538821 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA downstream 539148 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000462 lncRNA downstream 1407095 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 1517198 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 1533753 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00000436 mRNA upstream 121647 21725821 ~ 21815554 (+) False XLOC_000265
TCONS_00000437 mRNA upstream 121647 21731382 ~ 21815554 (+) True XLOC_000265
TCONS_00000434 mRNA upstream 364188 21563334 ~ 21573013 (+) False XLOC_000264
TCONS_00000433 mRNA upstream 370825 21563311 ~ 21566376 (+) False XLOC_000264
TCONS_00000431 mRNA upstream 624605 21309386 ~ 21312596 (+) False XLOC_000261
TCONS_00000440 mRNA downstream 30736 22002649 ~ 22222474 (+) False XLOC_000267
TCONS_00000441 mRNA downstream 31260 22003173 ~ 22235421 (+) False XLOC_000267
TCONS_00000442 mRNA downstream 202338 22174251 ~ 22179555 (+) True XLOC_000267
TCONS_00000443 mRNA downstream 455222 22427135 ~ 22428853 (+) True XLOC_000268
TCONS_00000445 mRNA downstream 682962 22654875 ~ 22665098 (+) False XLOC_000271
TCONS_00000435 other upstream 370600 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 682719 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 1956214 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 2118105 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 2121752 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000444 other downstream 549299 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 1303009 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 1532421 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 1779186 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 1894965 23866878 ~ 23866965 (+) True XLOC_000285

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_08229980_08248846.mRNA True 3231 mRNA 0.49 12 CI01000300 8229980 ~ 8248846 (+)
bowfin (Amia calva) AMCG00017754 True 633 mRNA 0.48 4 CM030131.1 20927025 ~ 20929610 (+)