RNA id: TCONS_00000466


Basic Information

Item Value
RNA id TCONS_00000466
length 3667
lncRNA type inter_gene
GC content 0.44
exon number 18
gene id XLOC_000281
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23489111 ~ 23506518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgTACGACTTCTAGTGAGCAAGTGTAATTTCTTTGCTCCAGATCACAAGGTGGCGATAACGCACGTTGTGCGTTGGATTACCATTCCGCCAAAACAAAcatcagaagaagaagaacaaaagAACCCAATCAGCGACTCCTCTCAGTTTGAACGTGAAGCGGTTTAATATTGTGTTGCTTTTACAGAAGTTATAACGTTATTTAAATAATCTCTGGAAGGGATCTGCATGTCGAAAACACGATCGCAAGTAAACGTCCAAGATGAACGCAAGAGGAAAAAACGGGCCGGTATTTATCAAGACATACAGTAAACGAATGCGAAAGTTGGAGCCTTGGATCTCCCCTGACCTAAGAAAAGCGGCTTTCTCTTTTTCAAGCACTTTTTCATCAGATCAGTCGATACAAGAGACCCCAAAGCCCAAGAAAAGaaaaataaaagaaacttcCTCCCGCACTGCTAAGACCAAAGTGATGGCTGCcataaaggaaaataaaagtgATGAAGAAAACTATTCACCATCCTTACCTTCCAGAAAGAAAATACATGCAAAACCCTCAGTAAAGACTACAGCCATGAGAAAGCCTCGAACCACAAAGAGGACAAAAAAAAGTACACAATTAAATCTCAGCAGCAGTGAAAATGATGACGACTCCATTATGATAAACCATGTTAGTTCCAAAACTGCTGCTAATGAATGTGCTGGtaATGACAAGAAAGTTTTACATCCTCCTTATTTGGGCAAGTTTGTCACAAGTCGCAGAAGACCACTGCCACCCATCCAAACCAAGCAAATTGCTGTTCTTCACCACACATTAAATTCATCTGATGATTTCCTCCCATCATCCTTCCAAAACAAGCGCAGGAAGACTGTGTGCATGAAAAACTATGACTCAAATAAACATGCTGCTCGCAAATGCTTACAGAACCGTGTGCCTCTGGCTGAGGTATCTTTTAATGACAGCGATGACCAGCATCTCCCAAGTAAATGTCCCCTTCTGTCCAGCACCCCTTCTGTAGTCTGCAGACAGCTGAAAAACCTACCAGAGCCCTCCATCAGTGAGATCTCCTCCCTCAGCTTTGATGAATCTGGACAACCTGCcgaaaacaacaacaattctAATGGTTTGGACTATGTCAAAGAATGCGATATCATTCCACAGGCAAACACTAAGCAACAGCTCCAAAACCCAGGTGTCTGTTCTGAGAGAGTCATAGAACTGAAAGAGGGAGAAAAGGATGTAACTGAGAAAAGGAAAGATGATTACAGAGAGATGGTTCAGCATAAAAGAGGATTCTCAGAGGCCATGTCTGCTCAGACACACACAGGTTTTGGTTGTGTGTCACCACAGTCACAACTACAATCTTTAGAAGAAGAGTTAAAAGAGAGGTGTCACAAAGTGGAGACGGCTGTAAGGCTCAAAAAAATTAACATCTCAGATTATTCATCACTGCTGGGCTGCAGCAAGAAACAGGAAGAGAGGACTGCCTTAAACTCTTTGGAGTCGATCATGCCGGCAGAAATTCTGAGCAGCCAAACTTATGTAACTGTATCATCCAGCTGCTCTACACCATCGAAAGCATCCATCTATTTCTCTTCCTCTAAATCACTCTCCCCTTCCCATTTACCAGAAGCAAACCAGTCTCTTATTGAACGTCTTAAGGCTGAATGTCTGTTATCATCCCTTGCTGTCTGCATTCCTCGTCTTGACTTGGGCGTGTATTCTTTTATTCCACATGGAGTGACAAAAGCACCCTGCACTGATAATTCATACATCTGCCACAAGGACTCTGCCACTTCCCCAACTTTAAAGAAGGCAGAGCATGTTATGCTAGATAGTCCAATTAATCACAGGACTCCTGGTAATTTGAAAGCGGTTGCCCAACACTTGTTTCTACCACTTCAACCACCTACGGTCTCTCCACCTGCCTCTGTAGCTAATAGCAAAAACCGACCGCCTGTTGTGACTAAAGAACGAGCTGGTACTGGCACGGGTCGTAAAGTTTGTGTGAGTGGACTGAATGTTAGCCGGTGGTCTAAGAAGGGTGCTGGAGAATTCCAAGACAAAAGAAGGAAAAGGGAAGGCCGAACAAAGGCTGCTTCAGGAGACTACAGTTCATGGGGCAGTATGTTGTCTACTGGAGCAGACACCTTTGTAAAGGAATCCGCATGTGGCATGGTGCAGGGCACCAGTGGGTTGAGTCTGGCTGTGACACCTCTCAGACTTGAGCAAATGAATCTCTCTTCTTTTCTGGCCAACTTCACTCCTGACAATCTCACAACACACTCCTGGGGCAGACTAAAGGCGGCACTTTCCCTGCATAAGAAAAAAACTGcATTTCCCACCCCACGGCGCTTTGCTCAGTCTCACCTGAAGTCCCCTGGCATTGGATTTCCAGCAGACAACAGTCTAGACCTTTTTGCTTCGCCTTTCTGCACACCATCCAGAATGAAAAGTTCACAGATGCTCCAGTCCACTATGAACACCCCCATGACTACATTTCAAGAGGATATCAGTGATGCAGAAAAGGTATATCAGGAATGTCAGCAGAGCGGCCCACTTTCGTTTAGCGACTGCATCCCTCCTGCTCGCATGAAGCACCTCAATAAAATTGGTGAAGGGACATTTGGAGAGGTCTTCTCAACTATAAATGATTCCAATGAGAGTGTTGCTCTCAAAATCATCCCAGTAGAAGGCAGTCAGCAGGTCAATGGTGAACATCAGAAAACATTTGGGGAAATCCTTCATGAAATCATCATTTCCAAAGAGCTGAGCAGCCTTAACCTGAAGGAGTTTAACAAGTCGGATGGTTTCATTGGACTTAACAACCTACATTGTGTCCGTGGGTGTTATCCTGAAGCTCTGCTTAAAGCATGGGACAAGTTTGACCATCAGAAAGGGTCAGAGAATGATCGACCTGATTTCTTTGATGACGAACAGCTATTTTTAATCCTGGAGTTCGAATTTGGAGGAAGTGATCTGGAAAACATGAATGGCAAGCTATCCTCTATGGCCCAGGCCAAAAGTGTGCTACATCAAGTCACTGCATCCTTGGCTGTAGCCGAGCAAGCGCTTTGCTTTGAACACAGAGATCTTCATTGGGGGAACATACTGGTGAAGAACGTCAAGCACAAGCACAACGAATTCATTCTGAATGGAACAGTTCATTGCATTGAGACACGAGGAGTTCACGTCAATATTATTGACTACTCGCTCTCACGCCTGGAAATCGATGGACTGACTGTATCATGCGACATCTCTTCCGATGAGGAGTTGTTTATGGGTCAGGGAGATTATCAGTTTGAAATCTACCGTCTTATGAAGAAAGAAAACAAAAACTGTTGGTCGGCATATAATCCTCATTCCAACGTGCTGTGGCTGCACTATCTGGCTGATAAACTTTTGAGCATGAACTACAGGAACAAAACCCAGTCCAGCCAGCAGAGGACACTGAAGAGTGCCCTCAATGCTTTTAAGTCAGAGATAATGAATTATCCGTCAGCTACAGAAGCTCTTATGAAGTGCAGTTTCTTTCAGTGAAACGGCTGTTTTAATTACCACAGTAAATAGACCTGTATATTTAGAATGATTAATCCAGAACAGATAGAATGTTCTACTATTttgtacaaaatatattaaaaaaacaaataaagaaaatgtgcaatc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0042393 histone binding molecular_function
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000462 lncRNA upstream 108901 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00003067 lncRNA upstream 970357 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA upstream 970357 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000439 lncRNA upstream 1535648 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1987627 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00002830 lncRNA downstream 611849 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 619862 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00003070 lncRNA downstream 830462 24336980 ~ 24337792 (+) False XLOC_000290
TCONS_00000481 lncRNA downstream 830544 24337062 ~ 24343734 (+) False XLOC_000290
TCONS_00000482 lncRNA downstream 831874 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00000464 mRNA upstream 71174 23406403 ~ 23417937 (+) False XLOC_000280
TCONS_00000465 mRNA upstream 71200 23408622 ~ 23417911 (+) True XLOC_000280
TCONS_00000463 mRNA upstream 90119 23398405 ~ 23398992 (+) True XLOC_000279
TCONS_00000460 mRNA upstream 92657 23372470 ~ 23396454 (+) False XLOC_000278
TCONS_00000461 mRNA upstream 95296 23372494 ~ 23393815 (+) False XLOC_000278
TCONS_00000469 mRNA downstream 52960 23559478 ~ 23573230 (+) False XLOC_000282
TCONS_00000470 mRNA downstream 53698 23560216 ~ 23572825 (+) False XLOC_000282
TCONS_00000471 mRNA downstream 57173 23563691 ~ 23572574 (+) True XLOC_000282
TCONS_00000473 mRNA downstream 276831 23783349 ~ 23910036 (+) False XLOC_000284
TCONS_00000477 mRNA downstream 278387 23784905 ~ 23912788 (+) False XLOC_000284
TCONS_00000457 other upstream 209409 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000444 other upstream 967785 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 1922510 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 2234629 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 3508124 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000472 other downstream 244581 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 360360 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000480 other downstream 608007 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000490 other downstream 876449 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000495 other downstream 1613571 25120089 ~ 25120205 (+) True XLOC_000301

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_09080472_09093223.mRNA True 4015 mRNA 0.43 16 CI01000300 9079792 ~ 9093318 (+)