RNA id: TCONS_00003067


Basic Information

Item Value
RNA id TCONS_00003067
length 719
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id XLOC_000269
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22510734 ~ 22518754 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGTTTCTAACTTTACCTCCTAAATGACTCACTGCTGAGTGACACAGATGCATGGCAGTGACAAAAAGTGAAGCCTCTTGTATTTTATTTGGATACAGATTTACCAGCTAAACCAAGCGAGATGAAAGGGAAAGCTTAAAGCAGACAGGGCATTTCATTCAGTGACAAAACGTGATCGCGACTAAACGTGGACTTGTTGCAAACTTTACGTAAACAGCTTTCAGTGAGTCGACAAGACTTTAAATATTTCAACGCTCTGACGCACAAGCGGTGTTGACGAAAGTGGAAAATGAATAACTCGCATTTCATTACCACAGTAGAACCTCTGGGTTCACCTACCGGTTTCCGCTGATAAATGGCTTTAAAGCGATTAAGCAAAATTGTGCTAGCGTTGTTGTCTAAAATAGCCGTCGGTTTCCCCGCAGTTACAGTGTCTTCCGAGCGAGACGAATATGCGCCTGAAAACTCCGCGTTGCGCGCGCGCGCAGCGGCGTGAAGAATGGATTTAACTGCGTAGAAAGAAAGGTGCACATATAAAGAGCAACCTGGGGTACAGCAAGAATATCTGGAATCACGATCGTCCATTATGGGAGAACTGCTGGCCTGGTGTTCCATAGAAAACCAAAGCAGAGACCACCATCACCCATAGATTCAACTGCTCCAGTCAACTTCTTGGTAAATACAGCCGTCTTTGAGGGAATCTTTGTTCATTTAAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000439 lncRNA upstream 557271 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1009250 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003064 lncRNA upstream 1169081 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA upstream 1169081 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003063 lncRNA upstream 1572291 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00000462 lncRNA downstream 860254 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 970357 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 986912 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00002830 lncRNA downstream 1599613 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 1607626 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00000443 mRNA upstream 81881 22427135 ~ 22428853 (+) True XLOC_000268
TCONS_00000441 mRNA upstream 275313 22003173 ~ 22235421 (+) False XLOC_000267
TCONS_00000440 mRNA upstream 288260 22002649 ~ 22222474 (+) False XLOC_000267
TCONS_00000442 mRNA upstream 331179 22174251 ~ 22179555 (+) True XLOC_000267
TCONS_00000438 mRNA upstream 538821 21937201 ~ 21971913 (+) False XLOC_000266
TCONS_00000445 mRNA downstream 136121 22654875 ~ 22665098 (+) False XLOC_000271
TCONS_00000446 mRNA downstream 136154 22654908 ~ 22664172 (+) True XLOC_000271
TCONS_00000447 mRNA downstream 172502 22691256 ~ 22703383 (+) True XLOC_000272
TCONS_00000448 mRNA downstream 324181 22842935 ~ 22873915 (+) False XLOC_000273
TCONS_00000449 mRNA downstream 332507 22851261 ~ 22876174 (+) False XLOC_000273
TCONS_00000435 other upstream 944133 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 1256252 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 2529747 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 2691638 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 2695285 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000444 other downstream 2458 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 756168 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 985580 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 1232345 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 1348124 23866878 ~ 23866965 (+) True XLOC_000285

Expression Profile

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